Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1285 ATGTCATCTTTGAGCAGGGAACTGGTGTTCCTCATTCTTCAATTTCTCGAGGAAGAGAAATTCAGAGATACTGTGCACAAGTTGGAGCAAGAATCGGGTTTGTTCTTCCATGTGAAgtattttgaagagaaaattcTGGCTGGAGAGTGGGATGAGGTTGAGAAATACCTCTCTGGATTTACCAAAGTTGATGACAATCGATACTCCATGAAGATTTTCTTTGAGATTAGGAAGCAGAAGTATCTTGAAGCCTTGGACagGCATGACAAAGTGAGAGCTGTTGAAATTCTGGTGAATGATTTGAAAGCTTTTTCATCATTTAACGAAGATTTGTACAAAGAGATAACACATCTTCTAACCCTTAACAATTTCAGGGAAAATGAACAGTTATCAAAGTACGGTGATACTAAATCAGCTCGAAATATAATGCTGGTAGAGCTTAAGAAATTGATTGAAGCAAATCCCCTCTTCCGAGATAAGCttatatttccttcatttaaGACATCACGGTTACGAACGCTGATTAATCAAAGTTTGAACTGGCAACATCAACTGTGCAAGAACCCAAGGCCAAATCCAGacattaaaactttatttattgaCCATTCTTGTTCACCTACAAATGGATCTCGTGCACCTACTCCTGTCAACCTTCCTGTTGCAGCTGTTGCAAAGCCTTCATCTTATGCTCCCCTTGGAGCACATGTTGGGCCATTTACACCAGCCCCAGCTGCTTCTAATGTTAATGCTTTAGCGGGATGGATGATAAATGGGAATCCTTCCACATCTTCTCAATTGCCTGTAGTTGCCGCTTCCTCATTGTCTGGTCCCCCAAATCAAGTCTCCGTTTTGAAGCATCCAAGAACACCTAATGCTCTTGGAATGATGGATTATCAAAACAATGATCATGAGCAACTAATGAAACGGTTGCGAACTGCACAATCTGTGGATGAGGTTACATATCCTGCTCCACCTCAACAAGCATCTTGCTTGCTTGATGACCTTCCTAGAGCTGTTGTTTGTACATTACATCAGGGATCAACAGTGACAAGCATGGATTTTCATCCTTCCCTTCATTCTTTACTTGCTGTTGGTTGTGCAAATGGTGAAATTTCACTTTGGGAAGCAGGGCTGAGAGAGAGGCTGATATCAAAGCCTTTCAAAATATGGAATATTTCTGCTTGTTCTGTCTTATTTCAGGCTGCAATTCTGAAAGACTCATCTATATCCATTAATCGTGTATCATGGAGTGCAGATGGGAATTTTATTGGTGTTGCTTTTACAAAACATTTGATTCATTTGTATGTCTATCAAGCACCTAATGACCTACAGCAGCGTTTAGAGATTGATGCTCATGTTGGTGGTGTTAATGACTTGACGTTTTCTAATCCAAACAAACAGCTATGTATTGTGACTTGTGGAGATGATAAGTTAATAAAGGTATGGGATTTGACCGGAAAGAAGCTCTTTAACTTTGAAGGTCATGGAGCACCTGTTTATTCTATTTGTCCTCATCAGAAGGAAAATATCCAGTTTATATTTTCAACTTCTGTTGATGGGAAAATCAAGGCCTGGTTATATGATGACATGGGCTCCAGGGTGGACTATGATGCTCCTGGACAGTGGTGCACCACAATGCTCTATAGTGCTGATGGAAGTAGATTGTTCTCTTGTGGGACAAGTAAAGATGGAGATTCTTTCCTAGTTGAGTGGAATGAAAGTGAAGGAACACTAAAAAGAACATATTCTGGGTTTAGAAAGAAATCTGCTGGCATTGTGCAATTTGACACAACAAAAGGTCGCTTTTTGGCTGCTGGTGAAGATAACCAGATTAAGTTTTGGGATATGGATAATGTCAATGTTCTGACTAGTACAGATGCTGAGGGCGGTCTTCCTAGTCTCCCTTGCTTGAGGTTCAATAAAGAAGGTAATCTGCTTGCTGTTACTACAGCAGATGGTGGTTTGAAAGTTCTTGCTAATTCCAATGGCATCAAATACTTGAGGGCCATTGAAGCTCGGTCGTATGAAGCATGTAAAACACCTTTTGAGACAAAGGTACCTGGCTCTTCCGTGGTTGCAAATATCAGTCCACTCATCAATAAAATAGAACATATGGACAGAAGCTCTCCTGCTGGACTGCCACCTTCCCTTaGTGGAGTTGATTCTATGCGCATAGAGAGGAAAAGAAGTTTGGATGATGTATCTGACAAATCTAAAGGTTGGGAATCAACAGAAATAGTTGATCCTGTTCAGTGTCGAACAGTTACTATGCCAGATAATATGGATCCCACTAACAAGGTTGCTCGTCTTCTTTACACAAATTCTGGAGTTGGTCTTCTTGCTCTTGGCTCGAAAGGGATTCAGAGGCTGTGGAAATGGAGCCGTAATGAACTGAATCCTAGTGGAAAGGCCACGGCAAGTGTTGTTCCACAACATTGGCAACCAAATAGTGGTCTTCTCATGAATAATGATGTCCCAGACAATTATGAAGTAGCAGTTCCTTGCATAGCACTCTCAAAGAATGATTCCTATGTTATGTCTGCATGTGGAGGAAAAATTTCACTGTTCAACATGATGACATTTAAGGTAATGGCAACTTTTATGTCACCTCCCCCTATTTCAACCTTCCTTGCATTTCATCCTCAAGATAATAATATCATTGCAATTGGAATGGAAGATTCAACAATTCATATTTACAACGTTAGGGTAGATGAGGTCAAATCTAAATTGAAGGGTCACCAGAAGCACATTACTGGTTTAGCTTTTTCAGCACAACTGAATATCTTGGTTTCATCTGGTGCTGATGCTCAGCTTTTCTTTTGGAGCATTGACTCATGGGATAAGAAGAAATCAATATCAATCCAAATGCCAGCTGGAAATGCAGCTGTTGGTGATACTCGAGTGCAATTCCACATTGATCAAGTAAACTTACTGGTATGCCATGAAACGCAGCTAGCAATATATGATGCTTCAAAAATGGAATTGATTCGGCAGTGGGTGCCACAAAATGGGTTGTTTGGTTCCATATCCTCTGCAACATATTCTTGCAATAGCCAACTAGTTTATGCTGCTTTCACTGATGGAAATATTGGAGTATTTGATGCTGACACCCTCAGACTAAGATGTCGTATAGCGTCATCAGCATACCTACATCAGACCACATTAAACAGCCAAAATGTGTACCCTATTGTTGTTACAGCACATCCACAGGAGCCCAATCAATTTGCAATAGGACTGTCTGATGGCTCAATTAAGGTTATTGAGCCCAGAGAGTGTGATGCGAGGTGGGGAATTAAAGCACATGTTGATAGTGGATTGCAGAATGGTAGGACAGCGTCACCCTCAACCACAAAATAA 3357 0.4024 MSSLSRELVFLILQFLEEEKFRDTVHKLEQESGLFFHVKYFEEKILAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDKVRAVEILVNDLKAFSSFNEDLYKEITHLLTLNNFRENEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLIFPSFKTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHSCSPTNGSRAPTPVNLPVAAVAKPSSYAPLGAHVGPFTPAPAASNVNALAGWMINGNPSTSSQLPVVAASSLSGPPNQVSVLKHPRTPNALGMMDYQNNDHEQLMKRLRTAQSVDEVTYPAPPQQASCLLDDLPRAVVCTLHQGSTVTSMDFHPSLHSLLAVGCANGEISLWEAGLRERLISKPFKIWNISACSVLFQAAILKDSSISINRVSWSADGNFIGVAFTKHLIHLYVYQAPNDLQQRLEIDAHVGGVNDLTFSNPNKQLCIVTCGDDKLIKVWDLTGKKLFNFEGHGAPVYSICPHQKENIQFIFSTSVDGKIKAWLYDDMGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTLKRTYSGFRKKSAGIVQFDTTKGRFLAAGEDNQIKFWDMDNVNVLTSTDAEGGLPSLPCLRFNKEGNLLAVTTADGGLKVLANSNGIKYLRAIEARSYEACKTPFETKVPGSSVVANISPLINKIEHMDRSSPAGLPPSLSGVDSMRIERKRSLDDVSDKSKGWESTEIVDPVQCRTVTMPDNMDPTNKVARLLYTNSGVGLLALGSKGIQRLWKWSRNELNPSGKATASVVPQHWQPNSGLLMNNDVPDNYEVAVPCIALSKNDSYVMSACGGKISLFNMMTFKVMATFMSPPPISTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKHITGLAFSAQLNILVSSGADAQLFFWSIDSWDKKKSISIQMPAGNAAVGDTRVQFHIDQVNLLVCHETQLAIYDASKMELIRQWVPQNGLFGSISSATYSCNSQLVYAAFTDGNIGVFDADTLRLRCRIASSAYLHQTTLNSQNVYPIVVTAHPQEPNQFAIGLSDGSIKVIEPRECDARWGIKAHVDSGLQNGRTASPSTTK 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1285 1118 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 35 92 IPR006595 -
Ssu1g1285 1118 Gene3D - 537 672 IPR015943 GO:0005515
Ssu1g1285 1118 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Ssu1g1285 1118 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 342 507 IPR011044 -
Ssu1g1285 1118 SMART ctlh 34 92 IPR006595 -
Ssu1g1285 1118 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 624 IPR001680 GO:0005515
Ssu1g1285 1118 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Ssu1g1285 1118 SMART WD40_4 1048 1088 IPR001680 GO:0005515
Ssu1g1285 1118 SMART WD40_4 903 942 IPR001680 GO:0005515
Ssu1g1285 1118 SMART WD40_4 816 857 IPR001680 GO:0005515
Ssu1g1285 1118 SMART WD40_4 485 526 IPR001680 GO:0005515
Ssu1g1285 1118 SMART WD40_4 575 615 IPR001680 GO:0005515
Ssu1g1285 1118 SMART WD40_4 992 1034 IPR001680 GO:0005515
Ssu1g1285 1118 SMART WD40_4 397 436 IPR001680 GO:0005515
Ssu1g1285 1118 SMART WD40_4 336 375 IPR001680 GO:0005515
Ssu1g1285 1118 SMART WD40_4 618 659 IPR001680 GO:0005515
Ssu1g1285 1118 SMART WD40_4 529 572 IPR001680 GO:0005515
Ssu1g1285 1118 SMART WD40_4 860 900 IPR001680 GO:0005515
Ssu1g1285 1118 SMART WD40_4 442 483 IPR001680 GO:0005515
Ssu1g1285 1118 Gene3D - 751 960 IPR015943 GO:0005515
Ssu1g1285 1118 Gene3D - 961 1108 IPR015943 GO:0005515
Ssu1g1285 1118 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 1117 - -
Ssu1g1285 1118 Gene3D - 259 536 IPR015943 GO:0005515
Ssu1g1285 1118 SUPERFAMILY WD40 repeat-like 967 1103 IPR036322 GO:0005515
Ssu1g1285 1118 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 910 945 - -
Ssu1g1285 1118 SMART Lish 4 36 IPR006594 GO:0005515
Ssu1g1285 1118 Pfam WD domain, G-beta repeat 449 483 IPR001680 GO:0005515
Ssu1g1285 1118 Pfam WD domain, G-beta repeat 909 942 IPR001680 GO:0005515
Ssu1g1285 1118 ProSiteProfiles Trp-Asp (WD) repeats profile. 910 951 IPR001680 GO:0005515
Ssu1g1285 1118 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 484 IPR001680 GO:0005515
Ssu1g1285 1118 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 464 947 IPR011047 -
Ssu1g1285 1118 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1117 IPR027728 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1285 Ssu-Chr1 28294181 28304051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1285 336 559 Miscellaneous Gene Families AT5G08390 28.571 1.21e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1285 - - tcc:18603564 1779.22