Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1276 ATGGGTGTTTTTGCTTACGAAGATGAGCACCCCTCTCCCGTGGCTCCTGCTAAACTCTACAAAGCTCTGGCAAAAGATGCCGACAACATTGTCCTAAAGGTTATTGAGTCCTTCCAGAGTATTGAAATCGTTGAAGGAAACGGAGGGCCTGGAACCGTCAAGAAGCTAACCGTTGTTGAAGGCGGCCAAACCATCTACCTTCTGCAAAAACTTGATGCAATCGACGAGGCTAACTTATCATACGACTACAGCGCAGTGGGAGGGACGGGGTTGCACGAAAGTTTGGAGAAAGTTACATTCGAGACGAAGGTGTTGCCTGGCCCTGATGGGGGCTCCATCGTGAAGGTCACTGTCAAATACCACACCAAAGGCGATGCACCGCTCTCAGATGCAGTGCGTGATGAAACCAAGGCCAAGGCAAGTGGACTTTTCAAGGCCATTGAGGGTTACGTTTTGGCAAATCCTGCTGAATACTAG 477 0.4969 MGVFAYEDEHPSPVAPAKLYKALAKDADNIVLKVIESFQSIEIVEGNGGPGTVKKLTVVEGGQTIYLLQKLDAIDEANLSYDYSAVGGTGLHESLEKVTFETKVLPGPDGGSIVKVTVKYHTKGDAPLSDAVRDETKAKASGLFKAIEGYVLANPAEY 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1276 158 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1276 158 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1276 158 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1276 158 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1276 158 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1276 158 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1276 158 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1276 158 PANTHER - 1 156 - -
Ssu1g1276 158 SUPERFAMILY Bet v1-like 2 156 - -
Ssu1g1276 158 CDD Bet_v1-like 6 151 - -
Ssu1g1276 158 Gene3D - 2 157 IPR023393 -
Ssu1g1276 158 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Ssu1g1276 158 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 120 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1276 158 PANTHER ABA-RESPONSIVE PROTEIN 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1276 Ssu-Chr1 28210718 28213131 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1276 - - gmx:100305867 226.868