Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1274 ATGGGTGTGGGTGTATACACTCAAGAATATGACACACCTGCTGCTGTGCCTCCTACTAGGCTTTTCAAAGCCATGACACTAGATTTCCATAATCTCTTCCCAAAGCTTGTGGATGGCATCCACAGTATTGTATTCACCGAAGGAAGTGGTGGTCCTGGCACCATCAAGAAGATCACCACCATTGAAGGTGACAAAACCAAGTATGTGCTACACAGAGTTGATGCAATCGATGAGGCTACCTTTGTATATAACTTCAGCATAATTGAGGGCACCGCCTTGGCTGACACATTGGAGAAGGTCTCGTTCGAGAGCCAATTGGTGGAAGGTCCAAATGGAGGATCCATTAGGAAGGTACGTGTCCAATTTTTCACCAAAGGCGGGGCTACGCTTAGTGAGGAGGAGCTCAAGGCTAACCAAGCCAAGATCCAGGGGCTTGTAAAGCTAGTTGAAGGGTACCTTTTGGCAAATCCTGATTACTGA 480 0.4708 MGVGVYTQEYDTPAAVPPTRLFKAMTLDFHNLFPKLVDGIHSIVFTEGSGGPGTIKKITTIEGDKTKYVLHRVDAIDEATFVYNFSIIEGTALADTLEKVSFESQLVEGPNGGSIRKVRVQFFTKGGATLSEEELKANQAKIQGLVKLVEGYLLANPDY 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1274 159 SUPERFAMILY Bet v1-like 4 159 - -
Ssu1g1274 159 CDD Bet_v1-like 4 153 - -
Ssu1g1274 159 PANTHER - 3 159 - -
Ssu1g1274 159 Pfam Pathogenesis-related protein Bet v 1 family 6 156 IPR000916 GO:0006952
Ssu1g1274 159 Gene3D - 4 159 IPR023393 -
Ssu1g1274 159 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 90 122 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1274 159 PRINTS Major pollen allergen Bet V1 signature 111 127 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1274 159 PRINTS Major pollen allergen Bet V1 signature 67 86 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1274 159 PRINTS Major pollen allergen Bet V1 signature 86 99 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1274 159 PRINTS Major pollen allergen Bet V1 signature 51 60 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1274 159 PRINTS Major pollen allergen Bet V1 signature 145 155 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1274 159 PRINTS Major pollen allergen Bet V1 signature 5 25 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1274 159 PRINTS Major pollen allergen Bet V1 signature 28 38 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1274 159 PANTHER PATHOGENESIS-RELATED PROTEIN 10 3 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1274 Ssu-Chr1 28186693 28187473 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1274 - - gmx:100810115 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1274 1 28186693 28187473 Ssu1g1274 1 28186693 28187473 ECH