Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1270 ATGGACTCCGATTCCTGGATTTCCACGCGCCTCTCGTCCTCGTCACGCCGCTATCATTCTCGATCTGATCTGCACGTGGAGGAGAGTGAAGGGAACGATGATTTCAGAGCGGAGTTCCTCTGCCCTTTCTGCGCCGAGGATTACGACGTCGTTTCCCTCTGTTGCCACATTGACGACCACCACCCTCTCCAAGCCAAAAACGGGGTGTGTCCCATTTGTGGGAAAAAGGTGGGAATGGATCTCGTTGGACATATTACCACGCAACATGGGAACTTTTTGAGGGTGCAACGTAGAAGGAGGGTCAGGAGAGGAGGCTCTGCTTCAACATTTTCTATATTGAGAAAAGAATTACCAGAAGGAGCCTTGCAGTCCCTTCTTGGAGGTTCTTCATACATAGCTTCCTCCAATACTGAGCCTGATCCTCTGTTATTATCATTTATGTTTAACCCAGTTGTAACTGATGAATCTGTGAGTGCACCACCTCGTCCTTCCATTGAAGATGCCCTAGTAAAAGAAAGCTCAAAAGATGGTTTCTTGGAAAGAAAACCTCAACAGTTACAGCTGTCAGAAGAGGATCAAGTAGAGAAGGCTCGGAGGTTTGAATTCGTGCAAGGGCTACTGATGTCCACCATTCTTGATGATGATAATTTATGA 654 0.4709 MDSDSWISTRLSSSSRRYHSRSDLHVEESEGNDDFRAEFLCPFCAEDYDVVSLCCHIDDHHPLQAKNGVCPICGKKVGMDLVGHITTQHGNFLRVQRRRRVRRGGSASTFSILRKELPEGALQSLLGGSSYIASSNTEPDPLLLSFMFNPVVTDESVSAPPRPSIEDALVKESSKDGFLERKPQQLQLSEEDQVEKARRFEFVQGLLMSTILDDDNL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1270 217 Pfam Drought induced 19 protein (Di19), zinc-binding 38 90 IPR008598 -
Ssu1g1270 217 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 214 IPR033347 -
Ssu1g1270 217 Pfam Stress-induced protein Di19, C-terminal 111 211 IPR027935 -
Ssu1g1270 217 PANTHER PROTEIN DEHYDRATION-INDUCED 19 HOMOLOG 4 1 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1270 Ssu-Chr1 28106127 28108461 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1270 - - gmx:100306669 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1270 1 28106127 28108461 Ssu1g1270 1 28106127 28108461 ECH
Ssu1g1270 1 28106127 28108461 Ssu7g1769 7 36171799 36174147 ECH