Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1258 atgagTCCAGCATGGGTTTTTGTGCTGGGCATTGCCGCAATGTTAGTGGTTGGGAATGGACAATCAGCAGTAAAGCCATTGGTGAAGACAGTGAAGGGCAAGAAGCTGTGTGACAAAGGGTGGGAGTGCAAAGGATGGTCTGTTTATTGCTGCAATGAGACTATCTCTGACTACTTCCAGACCTACCAGTTTGAGAACCTCTTCGCAAAGCGCAATTCGCCAGTGGCACATGCTGTTGGGTTCTGGGACTACCGCTCCTTCATCACCGCTGCTGCACTGTATCAGCCTCTTGGCTTTGGCACCACTGGAGGAAAGACCAGTGGGCAGAAGGAGGTTGCAGCTTTCCTTGGCCATGTGGGCAGCAAGACCTCTTGTGGTTATGGGGTGGCTACAGGGGGACCCTTAGCCTGGGGCTTATGCTACAACAAGGAATTGAGTCCTGATAAATACTACTGCGATGACTACTACAAATTAACCTACCCTTGCGCTCCTGGCGCAGCATACTATGGCCGTGGCGCCATCCCCATTTACTGGAACTACGGTTATGGAAAAACTGGGGAAGCCTTGAAGGTGGATCTGTTGAACCATCCTGAATACATAGAACAAAATGCCACCCTAGCCTTCCAGGCTTCAATATGGCAGTGGATGACCCCACCTGAGAAGCACCTACCTTCACCCCATGATGTCTTTGTTGGCAACTGGAAACCCACCAAGAATGACACATTGTCCAAAAGGGTACCTGGATTTGGTGCCACAATGAATTTGCTGTATGGGGATCAAACTTGTGGCCAGGGATCCGATAATGAGGCCATGAACAACATCATTTCCCATTATCTTTATTACCTTGATCTCGCGGGTGTTGGCAGAGAAGAGGCAGGGCCTAATGAAGTTCTCTCCTGTGCTGAGCAAGCTGCTTTTAAGCCCTCTGGCTCACATCTTCTGCCTCAAATTGAGCTTTACTTGGCTGAGATTCTTGGCCGGTCCATTCTTGAATCCTGCAAAATCTTAATAAAGGAGGCAAGTAGACAAAATATTTCAACTACTTTGGCCTTCACATGA 1059 0.4863 MSPAWVFVLGIAAMLVVGNGQSAVKPLVKTVKGKKLCDKGWECKGWSVYCCNETISDYFQTYQFENLFAKRNSPVAHAVGFWDYRSFITAAALYQPLGFGTTGGKTSGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKELSPDKYYCDDYYKLTYPCAPGAAYYGRGAIPIYWNYGYGKTGEALKVDLLNHPEYIEQNATLAFQASIWQWMTPPEKHLPSPHDVFVGNWKPTKNDTLSKRVPGFGATMNLLYGDQTCGQGSDNEAMNNIISHYLYYLDLAGVGREEAGPNEVLSCAEQAAFKPSGSHLLPQIELYLAEILGRSILESCKILIKEASRQNISTTLAFT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1258 352 Gene3D Endochitinase, domain 2 143 202 - -
Ssu1g1258 352 Pfam Chitinase class I 63 290 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ssu1g1258 352 PANTHER CHITINASE-RELATED 8 309 - -
Ssu1g1258 352 PANTHER - 8 309 - -
Ssu1g1258 352 Gene3D - 63 306 - -
Ssu1g1258 352 SUPERFAMILY Lysozyme-like 55 306 IPR023346 -
Ssu1g1258 352 CDD chitinase_GH19 63 300 - -
Ssu1g1258 352 PIRSF Endochitinase 2 307 IPR016283 GO:0004568|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1258 Ssu-Chr1 27811597 27813432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1258 22 306 Glycoside Hydrolase AT3G16920 82.105 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1258 - - gmx:100809617 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1258 1 27811597 27813432 Ssu1g1258 1 27811597 27813432 ECH