Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1245 ATGAGAGTTTTGGAGAGTGGTTCTCTGGTTAAATCTGTCACTCATTtGAACATGGCTTTGCAGAAGCATGTTCCTTCTGGCAATGCACCTTCTGTTAATATGAAACATTTGAGCTTTTCCAGTAAGGTGCCTAAGAAAGCTGAGCTTGACGAGGCAAATCAGAATCATGACATGGATGTGGATGTTGACCTTAGGGaagtttattttctcattatgcACTTTCTTTCTGCTGGGCCATGTCATAAAACTTATTTACAGTTTTGGAATGAGCTTCTTGAGCATCAACTTTTGCCTAGAAGGTATCATGCTTGGTATTCAAGGACTGGGGCACGTAGTggagatgaagatgatgatggtCAATCATTCCCTTTAAATTACAATATGTTAGTGGAGAGGTATCCTCATATTGAAAAGGATCACTTGGTAAAGCTTTTGAAGCAATTGTTATTAAATACAGCCTCCCCATCACTGGGTATGAGTCTTGGAAATGCTCCAAATGCAGCTGATGTACCTACTCTTCTAGGAAGAGGTTCATTTTCACTTCTGAGCTATGATAGGGATAAAATGAAAGAAGTCAAACGGCCACCTCCTCATATGCGCTGGCCTCATATGAAAGCCAATCAGGTTCATGGGCTTAATTTGAGGGAAATTGGGGGTGGTTTCCCAAGACACCACCGTGCACCATCTATACGTGCTGCATGCTATGCCATTGCGAAACCTTCTACCATGGTGCAAAAGATGCAAAATATCAAGAGGTTAAGAGGACACCGTAATGCTGTCTATTGTGCCATATTTGATCGGTCAGGAAGATATGTGATTACTGGTTCAGATGACCGACTTGTTAAAATTTGGTCCATGGAAACTGCATATTGTTTGGCCAGTTGCCGTGGACATGACGGTGACATCACTGACTTGGCTGTGAGTTCAAACAATGCTTTAGTTGCATCCTCATCAAATGACTGTGTCATTCGAGTGTGGCGCTTGCCAGATGGCTTACCAATATCAGTTTTGCGGGGACATACTGGAGCTGTTACAGCCATAGCATTTAGTCCCAGACCAAATGCTGTATACCAGCTTTTATCTTCCTCTGACGATGGAACTTGTAGGATATGGGATGCAAGGTATACCCAGTCAAGTCCAAGATTATATATTCCAAGACCTTCTGATTCTGCAATTGGGAAGAGCAGTGGCCCATCTTCAAGTACTTTACCACAGAGCCATCAGATTTTTTGCTGTGCATTTAATGCTAATGGAACTGTCTTTGTAACTGGTAGCTCTGACAATCTTGCTaggGTGTGGAATGCTTGTAAACTTAGTGTGGATGACACTGACCAACCAAATCATGAGATAGATGTGCTATCTGGGCATGAAAACGATGTGAATTATGTGCAATTCAGTGGATGTGCAGTAGCATCTTGGTTTTCCACGGCAGAAACTGGGAAGGAGGAAAAtatccccaaatttaaaaattcctgGTTGAATCATGACAACATAGTTACCTGCTCTCGTGATGGGAGTGCTATTATATGGATTCCCAAATCACGCAGGTCACATgGAAAAAGTGGTCGCTGGACGCGTGCATATCATCTTAGAGTTCCACCTCCACCTATGCCTCCTCAACCTCAGAGAGGTGGTCCTCGTCAGAGAATTCTACCAACTCCACGTGGTGTAAATATGATTGTTTGGAGCCTTGACAATCGCTTTGTCCTTGCAGCTATTATGGATTGCAGAATCTGTGTTTGGAATGCTTCTGACGGCAGCTTAGTACACTCATTGACTGGGCATACTGAATCCACATATGTTCTGGATGTTCATCCTTTTAATCCCCGGATAGCTATGAGTGCTGGTTATGATGGAAGAACTATCGTTTGGGATATATGGGAAGGCATGCCTATCCGAATATATGAGATATCACGTTTCAAGTTGGTGGATGGAAAGTTTTCTCCGGATGGGACATCAATTATACTTTCGGATGATGTTggtcaactatatatattaagcacAGGTCAAGGAGAGTCCCAGAAAGATGCCAAATATGATCAGTTCTTTCTTGGTGATTATCGACCTCTGATTCAAGACACTCATGGTAATGTACTAGACCAGGAAACTCAAATTGTTCCATATCGGCGGAATCTGCAAGATTTGCTTTGTGATTCagCAATGATACCATACCCAGAACCTTATCAGAGTGAATTTCAGCAAAGACGATTAGGAGCTTTAGGTCTTGAGTGGCGCCCATCATCACTAAAGCTTGCTGTTGGTCCTGATTTCAGTCTGGACCCAGATTATCAGATGCTTCCATTGGCAGACTTGGATTTGCTTACAGAACCACTGCCTGAGTTTATAGATGCTATGGAATGGGAACCTGAAGTTGAAGTGTTTAGTGATGATACAGATTCAGAATATAATGTCACTGAAGATTGCTCTTCTAAGGGTGAGAAAGGATGTTCAAGCTCCAATGCCTCCGGTGATTCACGGTGCAGCACAGATAACAGTGATGGGGAGGACATTCACATTGATAGCATTCGTagatcaaaaaggaaaaaacagaAGACTGAAaCTGAGATTATGACTTCTTCTGGGAGACGCGTGAAAAGGAGGAATTTGGATGAGTGTGATAGCAATACTTTTGGCAGCAGCCGAAGTAGGAAGGGAAAAAGTAGCCAAAAAACATCAAGAAGGAAATCTTCTAAATCAAAATCTTCCAGACCTCAACGGGCTGCTGCACGCAATGCACTGCatctattttccaaaattactGGTACGCCAACAGATGGAGAAGAAGATAGTTTGGTTGGTGATTTTTCAGATAGTGAATCAACATTGCCAGAGTCTAATATTGACAGTGATGAATCCGATGGAACTTTACAGAATGACCAACTGAATTATTCTAAGGGAAAAGAAGTATCATATTATGAATCAGAGGACACAAAATCTCATGAGTTAACTGAAACTCATGTGAATTCAATGAACAAGAGGAGATTAGTTCTCAAGTTGCCAATTCGTGATATATCCAAGTCCACGAATGAGTTTGACTACCAGGCTGAGATAGTTGGATCATCATCAAAAACTGCCCAAGAAGTTACTGATTTTATTAGGAACAAACCAAGTTCTAAGGATTCAGGGTATTATTCTGGCAGTACAAGTTACCCTACAGTTGAAAGAACGGATCAAGTAAAACTGGGCCAGGTAACAGACCGTGTAGACTTGCTGGGTAAAATTAGATGGGGAATGGTTAGGGCTCGTTCATCTAAGCCTTTGAGAGTGGGAGAAGCTATGCCATCAGAAGCAAATCCCTACTCTGAAAAATGTCCTAATCATCtcgatgaaaaagaaaatgtaagtaCTGGGCATGAGAAAGAGGACAAGGACTTCAGTGCATCAACCCCTGCTTTAGAAATCCAAAATGATGAGTATAAGGTAGATAGTTCGACAGAGATTAATGAAAATTGTGCTGGTACTACCTCACAGCCTTTGAATCCTACTGAGAATGGAAGAGAGATCATAGCTTCCAGCAGTTGCAGGGACAAAGATGGATCACTAATTCCTCAGGATACTGTTCCTGCTTTCGTCAGCTATAGTGGGGTTGACCAACTACCTGAACCAAATATTGGTTTTCCTTCTATTTCAACAAAACTAAGGTCTAAAAGGGGTTTAAGGGATCCTGAAAGTCCATCCAAGCATGAAACAAAACCTTCAGTGCTAAAGAATAGTGCATGTAGCActcatgataataataatttgaataatgaaCAGCATGTGGTTGTCGATAACAACACTAGAGTAACATCTAATCAGGGAGAGAATGGATTTCAAGAAATATATCCTCAGATTAGACAAAATAGCACTTCACATGATTTGCTAGAGCCACATTCACATAGAGATAAAATGTATAAAGCTGTTTATAGAAGATCAAGATCACATAGGGCTGTGACTAATTTAGCTGACAGTAGTGGCCCGGGAGAATCCACCTCAAATGGGAGCAACAGTAATTTCAATGCAGCAGCAGACTTCAGTAATGGCACAAATGAGGCTATTCATACCAATGGATCCTTAGAGTTGGAACCAGCCGCTTGCGACCCAAATTATGAACGGAGTAATCTCAAAGTGCTGCAAGGACATGGAAATTGTTTGGTTAAAAGTCCACAGAATGTTTCCACAAGTGGAGGACAACTCGCTGAAGTAGAAAGGGGCTCTAATTCAAAATTGACTGTAGGTTTGAGGTCCACTAGGAGTCGGAGGTCTAGTTATAATATTCGTGAGGCTAGTCCtgtaaataaaaggaaatcacTACAATCAGCTACCAAAGGATCTTGGTTGCTGTTATCAACCCATGAGGAAGGATGCAGATATATTCCACAACAGGGAGATGAAGTTGTATATTTGAGACAGGGGCACCAGGAGTATATAGATTATTGCCATAAAAGAGAGTCAGGGCCTTGGGTATCACTTAAGGGACATATAAGAGCTGTAGAATATTGTAGAGCTCAAAGCCTAGAGTATTCCCATGTTCCAGGGTCTGGTGATAGCTGCTGCAAAATGACCCTTCAGTTTGTAGATCCTAATTCAAGTGTAGTTGgcaaatcttttaaattaaccCTACCTGAAGTGACTAGTTTCCCAGATTTTCTTGTTGAAAGAACTAGGTTTGATGCTGCTATGCAAAGAAATTGGACACGCAGGGATAAATGCAGGGTTTGGTGGAAGAATGAGGATAATTCCTCTGGTAATTGGTGGGATGGTCGAATTCTGTGCGTGAAAGTCAAATCTTCTGAATTTCCAGACAGTCCATGGGAGAGTTGTACTGTTCGGTACAAGAGTGACCTCACTGAAACACATTTGCATAGTCCTTGGGAGCTTTTTGATGCTGATACTGAATGGGAACAGCCTCATATTGATGATAACATGAGAAATAAACTGCAATCCGCCCGTCACCAAATTACAGCAGTCGGGCAATACAGTCCAGGATCGTTATGGAGTGcatga 4986 0.4031 MRVLESGSLVKSVTHLNMALQKHVPSGNAPSVNMKHLSFSSKVPKKAELDEANQNHDMDVDVDLREVYFLIMHFLSAGPCHKTYLQFWNELLEHQLLPRRYHAWYSRTGARSGDEDDDGQSFPLNYNMLVERYPHIEKDHLVKLLKQLLLNTASPSLGMSLGNAPNAADVPTLLGRGSFSLLSYDRDKMKEVKRPPPHMRWPHMKANQVHGLNLREIGGGFPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHDGDITDLAVSSNNALVASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDARYTQSSPRLYIPRPSDSAIGKSSGPSSSTLPQSHQIFCCAFNANGTVFVTGSSDNLARVWNACKLSVDDTDQPNHEIDVLSGHENDVNYVQFSGCAVASWFSTAETGKEENIPKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGMPIRIYEISRFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRNLQDLLCDSAMIPYPEPYQSEFQQRRLGALGLEWRPSSLKLAVGPDFSLDPDYQMLPLADLDLLTEPLPEFIDAMEWEPEVEVFSDDTDSEYNVTEDCSSKGEKGCSSSNASGDSRCSTDNSDGEDIHIDSIRRSKRKKQKTETEIMTSSGRRVKRRNLDECDSNTFGSSRSRKGKSSQKTSRRKSSKSKSSRPQRAAARNALHLFSKITGTPTDGEEDSLVGDFSDSESTLPESNIDSDESDGTLQNDQLNYSKGKEVSYYESEDTKSHELTETHVNSMNKRRLVLKLPIRDISKSTNEFDYQAEIVGSSSKTAQEVTDFIRNKPSSKDSGYYSGSTSYPTVERTDQVKLGQVTDRVDLLGKIRWGMVRARSSKPLRVGEAMPSEANPYSEKCPNHLDEKENVSTGHEKEDKDFSASTPALEIQNDEYKVDSSTEINENCAGTTSQPLNPTENGREIIASSSCRDKDGSLIPQDTVPAFVSYSGVDQLPEPNIGFPSISTKLRSKRGLRDPESPSKHETKPSVLKNSACSTHDNNNLNNEQHVVVDNNTRVTSNQGENGFQEIYPQIRQNSTSHDLLEPHSHRDKMYKAVYRRSRSHRAVTNLADSSGPGESTSNGSNSNFNAAADFSNGTNEAIHTNGSLELEPAACDPNYERSNLKVLQGHGNCLVKSPQNVSTSGGQLAEVERGSNSKLTVGLRSTRSRRSSYNIREASPVNKRKSLQSATKGSWLLLSTHEEGCRYIPQQGDEVVYLRQGHQEYIDYCHKRESGPWVSLKGHIRAVEYCRAQSLEYSHVPGSGDSCCKMTLQFVDPNSSVVGKSFKLTLPEVTSFPDFLVERTRFDAAMQRNWTRRDKCRVWWKNEDNSSGNWWDGRILCVKVKSSEFPDSPWESCTVRYKSDLTETHLHSPWELFDADTEWEQPHIDDNMRNKLQSARHQITAVGQYSPGSLWSA 1661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1245 1661 MobiDBLite consensus disorder prediction 1200 1254 - -
Ssu1g1245 1661 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 328 - -
Ssu1g1245 1661 MobiDBLite consensus disorder prediction 886 901 - -
Ssu1g1245 1661 Gene3D - 404 473 IPR015943 GO:0005515
Ssu1g1245 1661 MobiDBLite consensus disorder prediction 810 828 - -
Ssu1g1245 1661 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 288 - -
Ssu1g1245 1661 MobiDBLite consensus disorder prediction 1311 1336 - -
Ssu1g1245 1661 MobiDBLite consensus disorder prediction 1103 1126 - -
Ssu1g1245 1661 Gene3D - 474 683 IPR015943 GO:0005515
Ssu1g1245 1661 Pfam WD domain, G-beta repeat 406 434 IPR001680 GO:0005515
Ssu1g1245 1661 Pfam WD domain, G-beta repeat 291 326 IPR001680 GO:0005515
Ssu1g1245 1661 Pfam WD domain, G-beta repeat 248 285 IPR001680 GO:0005515
Ssu1g1245 1661 Pfam WD domain, G-beta repeat 333 372 IPR001680 GO:0005515
Ssu1g1245 1661 Pfam WD domain, G-beta repeat 586 625 IPR001680 GO:0005515
Ssu1g1245 1661 MobiDBLite consensus disorder prediction 1231 1254 - -
Ssu1g1245 1661 Gene3D - 233 400 IPR015943 GO:0005515
Ssu1g1245 1661 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 626 IPR001680 GO:0005515
Ssu1g1245 1661 SUPERFAMILY WD40 repeat-like 244 668 IPR036322 GO:0005515
Ssu1g1245 1661 MobiDBLite consensus disorder prediction 1309 1336 - -
Ssu1g1245 1661 SMART WD40_4 585 625 IPR001680 GO:0005515
Ssu1g1245 1661 SMART WD40_4 246 285 IPR001680 GO:0005515
Ssu1g1245 1661 SMART WD40_4 330 372 IPR001680 GO:0005515
Ssu1g1245 1661 SMART WD40_4 544 582 IPR001680 GO:0005515
Ssu1g1245 1661 SMART WD40_4 396 434 IPR001680 GO:0005515
Ssu1g1245 1661 SMART WD40_4 446 511 IPR001680 GO:0005515
Ssu1g1245 1661 SMART WD40_4 288 327 IPR001680 GO:0005515
Ssu1g1245 1661 MobiDBLite consensus disorder prediction 1214 1230 - -
Ssu1g1245 1661 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 337 372 - -
Ssu1g1245 1661 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 381 IPR001680 GO:0005515
Ssu1g1245 1661 PANTHER WD REPEAT DOMAIN 9 26 1644 - -
Ssu1g1245 1661 MobiDBLite consensus disorder prediction 1087 1126 - -
Ssu1g1245 1661 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 434 IPR001680 GO:0005515
Ssu1g1245 1661 MobiDBLite consensus disorder prediction 935 961 - -
Ssu1g1245 1661 MobiDBLite consensus disorder prediction 793 961 - -
Ssu1g1245 1661 ProSitePatterns Trp-Asp (WD) repeats signature. 612 626 IPR019775 -
Ssu1g1245 1661 CDD WD40 249 625 - -
Ssu1g1245 1661 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 336 IPR001680 GO:0005515
Ssu1g1245 1661 MobiDBLite consensus disorder prediction 829 872 - -
Ssu1g1245 1661 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 26 1644 - -
Ssu1g1245 1661 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 294 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1245 Ssu-Chr1 27560298 27577725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1245 245 434 Miscellaneous Gene Families AT5G08390 22.513 4.75e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1245 K11797 - gmx:100818665 2934.05