Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1231 ATGGCCGACAAGTACAACCTCAAGAACCCCGCCGTGAAGCGGATCCTCCAGGAGGTCAAGGAGATGCAGTCCAACCCTTCCGACGATTTCACGAGCCTCCCGCTCGAGGAAAATATATTTGAGTGGCAATTTGCGATTAGAGGGCCTCGTGATACTGAGTTTGAGGGCGGTATTTATCATGGACGGATCCAGTTGCCCTCAGAGTATCCATTCAAACCCCCTTCATTTATGTTGTTGACACCTAATGGTCGTTTCGAGACTCAAACCAAGATTTGCTTGAGCATATCGAATCATCACCCTGAGCATTGGCAACCATCATGGAGCGTGAGGACTGCTTTAGTTGCACTGATTGCATTCATGCCTACCAACCCAAATGGTGCATTGGGCTCGTTAGACTACAAGAAAGAAGAGAGGCGTACCTTGGCCGTTAAATCTCGTGAAGCTCCTCCTAGATTCGGGACTCCTGAACGTCAGAAGCTGATTGATGAGATACATGAGTACATGCTAAGCAAGGCACCACCTGTTCCTCAACCTAGCGCCACAGAGGCTTCTGAAGAGCACCCCAAAAATGAGGAGGCCCAGGTTAATTCACCGAATCCAGAGTCTTTACCTGCAGGAGAGGGGATTTCAGATGAAGGTGATGGAATTGTTGAAGAGCAAGAAGTCTTTGCAAATGCTAACCCTGCAGGAGTTGAAGTTTCAAGGGAGGTTCAATCAAGTGTTTCAAGGAATGAGTTGCTCCAAAAGTCAGATACTAGGGTTCACAATCCTAGGCCAGAGACCAGGGTCCAGAAACCTGATGATTGGTTGTTCACACTAGCAGCTATTGGACTCACTATTGCAATTGTGGTCCTTCTGCTCAAAAAGTTCATTAAATCTACCGAACATGGGGCACTTTTCTCGGATGGATCTTAA 915 0.4743 MADKYNLKNPAVKRILQEVKEMQSNPSDDFTSLPLEENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRTLAVKSREAPPRFGTPERQKLIDEIHEYMLSKAPPVPQPSATEASEEHPKNEEAQVNSPNPESLPAGEGISDEGDGIVEEQEVFANANPAGVEVSREVQSSVSRNELLQKSDTRVHNPRPETRVQKPDDWLFTLAAIGLTIAIVVLLLKKFIKSTEHGALFSDGS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1231 304 Gene3D Ubiquitin Conjugating Enzyme 2 174 IPR016135 -
Ssu1g1231 304 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Ssu1g1231 304 MobiDBLite consensus disorder prediction 171 212 - -
Ssu1g1231 304 SUPERFAMILY UBC-like 11 133 IPR016135 -
Ssu1g1231 304 MobiDBLite consensus disorder prediction 248 263 - -
Ssu1g1231 304 MobiDBLite consensus disorder prediction 232 247 - -
Ssu1g1231 304 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 304 - -
Ssu1g1231 304 PANTHER BNAC01G21910D PROTEIN 6 304 - -
Ssu1g1231 304 SMART ubc_7 13 173 - -
Ssu1g1231 304 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Ssu1g1231 304 MobiDBLite consensus disorder prediction 227 263 - -
Ssu1g1231 304 CDD UBCc 12 127 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1231 Ssu-Chr1 27220221 27222379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1231 1 302 Miscellaneous Gene Families AT3G17000 64.052 8.75e-132 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1231 K10578 - gmx:100798396 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1231 1 27220221 27222379 Ssu1g1231 1 27220221 27222379 ECH