Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1200 ATGGACAATCAAAGGTCCATTTCTCTGCTTCAgTTCATGGCTGATGAAGGGCTTGTTCCGTCGccagaagaggaagagaaaaggaaaaatgctATTCAGAAGCTCAAGCAGATAGTCTCATCATGGATCAAGAAGGTTGCATGGCAGCGTCCACTGCCAAAACACCAGATTGCTGTTACTTCTGCCACAATATTGACATATGGTTCTTATGGCCTTGGAGTTCACAGCTCAGAGTCTGACATTGATGCTTTGTGTGTTGCTCCTTTCTTTGCCTCAATTGCAGAAGACTTTTTTGTTGTGTTGCATGACATGCTTAAAAGGAGACCCGAAGTGTCAGATATTCACTGTATCAAGAGTGCAAAAGTTCCTCTAATGCGATTTAAATTTGATGGAATTTCCATTGATCTTCCATACGCTCGGCTTAATGTATTATATGTACCTGAGAATGTTGACATactaaatccatttttcatgaGGAACATTGATGATACCAGCTGGAAAAGTTTGTCTGGGGTACGTGCAAATAAACACATTCTCCAACTAGTTCCTAATATTGAGAAATTCCAATCCATGCTACGATGTCTTAAACTATGGGCAAAAAGACGAGGAGTTTATGGAACTTTGCTTGGTTATTTGGGAGGAGTTCATATGACAGTTCTTGCAGCTTATGTTTATCAAAGACATCCTGATGCCACCTTAAACGCTCTAGTTGTGAACTTTTTTCAAACATTTGCATTTTGGCCCTGGCCTACGCCAGTGATGCTGCAGGAAGGAATGTTGCTAACAGCTGTAGATACTATAGAAACACGGTCCTTCATGCCTATATTGCTGCCATCAAGCCCTTATGAATATTGCCATTCAAACATTACTAAAAGCACTTTCTACCGAATCAGGACTGAGTTTCTTCGTGGACATAACATGACAAGGGATCTTTTGAAGCCAGATTTCATTTGGGATGATGTATTTGAGCCTTTTCCATACTCAAAAAGATACTCCCAATTTGTCAAGATTTACCTCTCTTCTCCTAATCATTATGCGCTTGGAGACTGGGTTGGTTGGGTCAAGTCACGCTTTCGTGGTCTTCTTGTAATTCTGGAGGGTATTCAAGGATTTTGTGACCCTAACCCTACAGAATATGTTGATAATGAGAAAACGGAGCCAAATGTGGTATTCTACTGGGGCTTGCAACCTAGTAAGAATAACTTCATGGACATTGATTTGGTAAAGGGAGAATTCATGAAGATTATCAACAATGGCTATGAAGGTTCTCCTGGGAGGATGGAGTTGTCCATCCTCTTGGCTTCTCAGCTTCCTAAGAATGCATTGATGATGGGGCTGTAA 1341 0.396 MDNQRSISLLQFMADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQRPLPKHQIAVTSATILTYGSYGLGVHSSESDIDALCVAPFFASIAEDFFVVLHDMLKRRPEVSDIHCIKSAKVPLMRFKFDGISIDLPYARLNVLYVPENVDILNPFFMRNIDDTSWKSLSGVRANKHILQLVPNIEKFQSMLRCLKLWAKRRGVYGTLLGYLGGVHMTVLAAYVYQRHPDATLNALVVNFFQTFAFWPWPTPVMLQEGMLLTAVDTIETRSFMPILLPSSPYEYCHSNITKSTFYRIRTEFLRGHNMTRDLLKPDFIWDDVFEPFPYSKRYSQFVKIYLSSPNHYALGDWVGWVKSRFRGLLVILEGIQGFCDPNPTEYVDNEKTEPNVVFYWGLQPSKNNFMDIDLVKGEFMKIINNGYEGSPGRMELSILLASQLPKNALMMGL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1200 446 Gene3D - 2 322 - -
Ssu1g1200 446 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 325 433 IPR011068 GO:0003723|GO:0016779|GO:0031123
Ssu1g1200 446 Pfam Poly(A) polymerase central domain 2 324 IPR007012 GO:0004652|GO:0043631
Ssu1g1200 446 PANTHER POLY A POLYMERASE 1 441 - -
Ssu1g1200 446 SUPERFAMILY Nucleotidyltransferase 3 179 IPR043519 -
Ssu1g1200 446 CDD NT_PAP_TUTase 27 142 - -
Ssu1g1200 446 Gene3D Beta Polymerase, domain 2 20 176 IPR043519 -
Ssu1g1200 446 Gene3D Poly(A) polymerase predicted RNA binding domain 327 431 - -
Ssu1g1200 446 SUPERFAMILY PAP/OAS1 substrate-binding domain 183 324 - -
Ssu1g1200 446 PANTHER NUCLEAR POLY(A) POLYMERASE 3 1 441 - -
Ssu1g1200 446 PIRSF PolyA_polymerase 1 440 IPR014492 GO:0004652|GO:0005634|GO:0043631
Ssu1g1200 446 Pfam Nucleotidyltransferase domain 61 127 IPR002934 GO:0016779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1200 Ssu-Chr1 26571464 26575292 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1200 K14376 - jre:109010780 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1200 1 26571464 26575292 Ssu1g1200 1 26571464 26575292 ECH