Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1193 ATGGCTCGGAAGGGTAATCAGCAGAAGAATGGAGTGGACCATCATGGATTGAATCACAAAAAAGGGGTTTCTGGTGGTGTACTTCCGGGAATGAAAGGCCATGTTAAAGGAGGGCCGGTGAAGGTTTTCCCGAGAGAGGAACTCGCCGACAGCGATAGGCCTAGCGGTGTTTCACAGACTGCATCTGATGCCAGTTGTTCAGGTGATGACTATATCAATGAGCAAAGGTCTGAAAAGATTTCTAGAAAAGAGAAGCAAGGGATGGCTGCAAAGCATGACCTGGAGGAGTCCTTGTCCTTTGAGAGTAATATGGGGGGTGGCAGTCTGAATTCTGAAGCTTCaatacaagaagaagaaaatgggaCTTTACCTAGTAGTAATCAAGGTCGACAAAGTATAAAGAGTAGATTGAGCTGTATACTGGATAGTTTGCATGTGAAAAGTGTGGTGGAAAAAGTAGAGCTTGCCGATAATGTGATAATTAGGAGATTAAGGTTGTCAGTGTTTTCCATCATTACAGCAGTTACAGAGTGGCTAACCAGGCAGACTCCACTGTTTGTATCTCTTAGAACCATGATGTTTAAAGCCTGTCATAATGTTAAAACGAAAGCTGTGCAGGCATATCCTGTTGTTATGAAGTGGTTCATGCATTTTGGAAACATAATGCTCCTATTATCAGTGTTTTGGTTGGACTGTGCCCTTCGGGGTATTGATTCATTTGTACGTATGGGTACAACGTCCTTCTTCTCTGTTATATGGTGTAGCGTATTCTCGGTGATTAGTATGATAGGGATGCTCAAGTTTCTTGCTGTCCTGGGCCTGGCTGCCTTGATTGGATTTTTTCTTGGGCTCATGCTTGCAATTTTGGTAGTTGCAATCATTGGAGTTGTTACCTTGTGGTTTTATGGTAGCTTCTGGACAACGGCATTTTTCATCATCCTTGGAGGATTGGCATTTATGTTAAGTCATGAACGGGTAGCACTACTTATCACCACAGTGTATTCTGTCTATTGTGCATGGCAGTATGTTGGGTGGCTTGGTTTGCTATTAGCTTTTAATTTAGCTTTTATCTCTAGTGATGTTCTGATATACTTCCTCAAGAAGAACATAGATCAACAGAGTAGGTCCAGTCCTTTTGAGCAAAGAACTGGAATGCATGGTCAACCAGGATTTAGTGATGAACCAACACATGCTTCTTCCTCTGAAAATGGACCGGGAATATCTGCAGATCGCAATGCTGGCATCCCTTCAACTAGTGGGGTTGATTCTGATGTAACTTCTGAAGATGAAGTTGTCCGTTTGTTGAACTGCTCTGATCACTATTCAGCATTGGGCTTGACGCGGTATCAAAATATAGATGTTTCAATACTAAAGCGGGAATATAGGAAAAAGGCAATGTTGGTACATCCTGATAAAAATATGGGTAATGAAAAGGCCGCAGAAGCCTTTAAGACACTTCAAAATGCATATGAgATTCTAATGGATTCCTTGAAGCGAAAAGCTTATGATGACGAGCTAAGGAGAGAAGAGATTTTGAGTGTATTTCGTAGATTTCATGATACTTCTCGTAAGAATGGTAGGCATGGATTCTTTCCTTCAGGATTTGCACGGTCAGATACAGATGGTGAGGACCCATTGGGTGAATCAAGGCGAATAGCCTGCAAAAGGTGTGGTGGCTTTCATGTCTGGATACACACCAAGAAACAAAAGTCTCGGGCAAGATGGTGCCAGgatTGCCAAGATTTTCATCAAGCTAAGGATGGTGATGGATGGGTTGAACAATCTTCCCAACCATTTCTTTTTGGCTTATTGCAGAAGGTGGATGCTCCTTCAGCATATGTGTGTGCTGGTAGCAGGATATATGATGCCACTGAATGGTATATCTGTCAGGGCATGAGATGTCCAGCGAATACCCATAAGCCAAGTTTTCATGTGAACACCAGTTTAATGTCCAAGCATAATTCTGGCAAAGGAACTACTTCAGGTCAAAGAGGTGGGCGGACGCCAACACCTAATATCGAAGAAACCATGACTGAGGAAGAATTCTTTGAGTGGTTACAGAATGCAGTACAGGCAGGTGTGTTTGACAATTTTAGTGGCACTGCAGCAGAGAGCCCATCTCCCAAATCTGGAAATGGGATGAAAAGTCCtggcagtggtagtggtggtggcagtggcagtggtggtggcagtagcagcaagagaaagaaaaagggcaAAAAGCAATGGTGA 2232 0.4104 MARKGNQQKNGVDHHGLNHKKGVSGGVLPGMKGHVKGGPVKVFPREELADSDRPSGVSQTASDASCSGDDYINEQRSEKISRKEKQGMAAKHDLEESLSFESNMGGGSLNSEASIQEEENGTLPSSNQGRQSIKSRLSCILDSLHVKSVVEKVELADNVIIRRLRLSVFSIITAVTEWLTRQTPLFVSLRTMMFKACHNVKTKAVQAYPVVMKWFMHFGNIMLLLSVFWLDCALRGIDSFVRMGTTSFFSVIWCSVFSVISMIGMLKFLAVLGLAALIGFFLGLMLAILVVAIIGVVTLWFYGSFWTTAFFIILGGLAFMLSHERVALLITTVYSVYCAWQYVGWLGLLLAFNLAFISSDVLIYFLKKNIDQQSRSSPFEQRTGMHGQPGFSDEPTHASSSENGPGISADRNAGIPSTSGVDSDVTSEDEVVRLLNCSDHYSALGLTRYQNIDVSILKREYRKKAMLVHPDKNMGNEKAAEAFKTLQNAYEILMDSLKRKAYDDELRREEILSVFRRFHDTSRKNGRHGFFPSGFARSDTDGEDPLGESRRIACKRCGGFHVWIHTKKQKSRARWCQDCQDFHQAKDGDGWVEQSSQPFLFGLLQKVDAPSAYVCAGSRIYDATEWYICQGMRCPANTHKPSFHVNTSLMSKHNSGKGTTSGQRGGRTPTPNIEETMTEEEFFEWLQNAVQAGVFDNFSGTAAESPSPKSGNGMKSPGSGSGGGSGSGGGSSSKRKKKGKKQW 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1193 743 MobiDBLite consensus disorder prediction 72 98 - -
Ssu1g1193 743 CDD DnaJ 439 495 IPR001623 -
Ssu1g1193 743 MobiDBLite consensus disorder prediction 698 743 - -
Ssu1g1193 743 Pfam Cleavage inducing molecular chaperone 548 646 IPR032843 -
Ssu1g1193 743 Gene3D DnaJ domain 427 517 IPR036869 -
Ssu1g1193 743 MobiDBLite consensus disorder prediction 393 424 - -
Ssu1g1193 743 SUPERFAMILY Chaperone J-domain 434 523 IPR036869 -
Ssu1g1193 743 PRINTS DnaJ domain signature 461 476 IPR001623 -
Ssu1g1193 743 PRINTS DnaJ domain signature 478 498 IPR001623 -
Ssu1g1193 743 MobiDBLite consensus disorder prediction 1 129 - -
Ssu1g1193 743 ProSitePatterns Nt-dnaJ domain signature. 483 502 IPR018253 -
Ssu1g1193 743 ProSiteProfiles dnaJ domain profile. 439 506 IPR001623 -
Ssu1g1193 743 MobiDBLite consensus disorder prediction 53 71 - -
Ssu1g1193 743 MobiDBLite consensus disorder prediction 376 424 - -
Ssu1g1193 743 PANTHER OS03G0832900 PROTEIN 1 743 - -
Ssu1g1193 743 MobiDBLite consensus disorder prediction 698 732 - -
Ssu1g1193 743 SMART dnaj_3 438 498 IPR001623 -
Ssu1g1193 743 PANTHER OS03G0832900 PROTEIN 1 743 - -
Ssu1g1193 743 Pfam DnaJ domain 439 503 IPR001623 -
Ssu1g1193 743 MobiDBLite consensus disorder prediction 101 129 - -
Ssu1g1193 743 MobiDBLite consensus disorder prediction 646 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1193 Ssu-Chr1 26408976 26413819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1193 1 706 Miscellaneous Gene Families AT5G49580 53.857 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1193 K09534 - gmx:100789594 1217.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1193 1 26408976 26413819 Ssu1g1193 1 26408976 26413819 ECH