Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1192 ATGGCTATGCGAGGGGATGGGATTTTCCCGGATGAGGTGGTTATTCAGATTCTCGCAAGGTTGCCTGTGAAGTCCCTTTTCAGGTTCAAAACCGTGTGCAAACTGTGGTATAGGTTGTCTTTGGATAAGTATTTCATTCAACTTTACAATGAGGTGTCTAGGAAGAACCCCATGATTCTGGTGGAGATTACAGATTCGCCTGAGTCCAAATCTAGCTTGATATGTGTTGATAATTTAAGGGGGGTGTCTGAGTTTTCACTGAATTTCTTGAATGATAGAGTTAAGGTTCGAGCATCTTGTAATGGCTTGTTGTGTTGCTCTAGTATTCCTGATAAGGGTGTCTTCTATGTTTGCAATCCGGTCACTCGCCAGTGCAGGTTGCTTCCCAAGAGTAGGGAAAGGCCTGTGACTCGGTTTTATCCAGATGGCGAAGCTACCTTGGTTGGCTTGGCCTGTGATTCGATGTATCAGAAGTTCAATGTTGTTCTAGCAGGTTACCATCGCACGTTTGGTCACAGGCCGGATGGAAGTTTCATATGTTTGGTGTTTGATTCGGAGTGGAACAAGTGGAGGAAGTTCGTTTCGTTCCAAGATGAGAATTTTACTCACATGAATAAGAACCAAGTTGTTTTTGTCAATAATGCTCTGCACTGGTTGACTAGTAGCTCTACTTATATACTTGCGCTTGATTTAAGTTGTGACGTTTGGAGGAAGATGCAATTACCGTATGACTTGATTTATGGAATGGGTAATAGGATTTATCTCTTAGACTTTGATGGCTGCCTGtctgttattaaaatttcagaaaCATGGATGAATATATGGGTGCTAAAAGATTACTGGAAAGATGAATGGTGTATGGTGGATAAGGTGAGTCTGAGGTGTATCAGAGGAATGGTGCCAGGCATTTTCCCAATCAGTCAGACAGTTGAATATGTTTTTCTGGCAACTCATAAGCAGATTTTGGTGTATCATCGCAGGAGTCAAGTTTGGAAAGAAATGTACTCTGTGAAGTATAGCTCAACACTCCCATTATGGTTTTCTGCTCATGCATATCGCACCACAATGTTCTCGTGTAACTGA 1083 0.4155 MAMRGDGIFPDEVVIQILARLPVKSLFRFKTVCKLWYRLSLDKYFIQLYNEVSRKNPMILVEITDSPESKSSLICVDNLRGVSEFSLNFLNDRVKVRASCNGLLCCSSIPDKGVFYVCNPVTRQCRLLPKSRERPVTRFYPDGEATLVGLACDSMYQKFNVVLAGYHRTFGHRPDGSFICLVFDSEWNKWRKFVSFQDENFTHMNKNQVVFVNNALHWLTSSSTYILALDLSCDVWRKMQLPYDLIYGMGNRIYLLDFDGCLSVIKISETWMNIWVLKDYWKDEWCMVDKVSLRCIRGMVPGIFPISQTVEYVFLATHKQILVYHRRSQVWKEMYSVKYSSTLPLWFSAHAYRTTMFSCN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1192 360 SUPERFAMILY F-box domain 9 80 IPR036047 GO:0005515
Ssu1g1192 360 ProSiteProfiles F-box domain profile. 9 52 IPR001810 GO:0005515
Ssu1g1192 360 Pfam F-box-like 10 43 IPR001810 GO:0005515
Ssu1g1192 360 TIGRFAM F_box_assoc_1: F-box protein interaction domain 99 324 IPR017451 -
Ssu1g1192 360 SMART fbox_2 9 49 IPR001810 GO:0005515
Ssu1g1192 360 PANTHER F-BOX PROTEIN INTERACTION DOMAIN PROTEIN 7 358 - -
Ssu1g1192 360 Gene3D - 9 45 - -
Ssu1g1192 360 PANTHER F-BOX PROTEIN INTERACTION DOMAIN PROTEIN-RELATED 7 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1192 Ssu-Chr1 26397573 26398655 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1192 - - gmx:100811223 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1192 1 26397573 26398655 Ssu1g1192 1 26397573 26398655 ECH