Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1183 ATGGTGAAGGTGCGCATGAACACCGCCGATGTGGCCGCCGAGGTCAAATGCCTCCGCAGACTCATCGGAATGCGATGCTCCAACGTCTACGATCTCTCTCCCAAGACTTACGTGTTCAAGCTGATGAACAGCAGTGGAGTTTCGGAATCGGGGGAGAGCGAGAAGGTTCTGCTGCTGATGGAAAGTGGCGTGAGGTTGCACACTACTCTCTACATGCGTGACAAGAGCAACACTCCTTCTGGTTTCACTCTCAAATTGAGGAAGCACATTCGGACCCGAAGGCTCGAGGATGTGCGCCAACTTGGGTACGATCGGATTATTCTCTTCCAATTTGGACTTGGGGAGAATGCGAACTATGTTGTATTGGAGCTGTATGCTCAGGGGAACATCCTCCTCACTGATTCTAATTTTACCGTCATGACTCTGCTGCGATCTCACAGGGATGATGATAAAGGGCTGGCAATTATGTCACGCCATCGCTATCCTACGGAGAGTTGTCGACTTTTTGAGCGAACTACTGTTGAAAAGTTGCGGACAGCCCTAGTGTCTTCCAAGGAAGATGATAATGATGAGGCAGTTAAGGCCAATGGAAATGGAAGTAATGCTTCTAATGTAGCAAAAGAGAAGCTGGGAACCCACAAAGGTGGGAAGTCGTCTGCCACCTTGAAAATTGTCCTTGGGGAGGCACTTGGTTATGGACCGGCACTTTCTGAACATATGATATTAGATGCTGGCCTAATCCCCAGTACAAAAGTTCCCAAAGATAGAACGTGGGATGATGCTACTGTTCAGGCTTTGGTCCAAGCTGTTGCGAAGTTTGAAGATTGGATGCAGGATATTATTTCAGGTGAAATAGTCCCTGAAGGATACATTTTGATGCAGAACAAAAATTTGGGGAAGGATTCTTCCATATCTCAACTAGGAAGTGTTAGCCAGATGTATGATGAGTTCTGCCCCATCTTGCTCAATCAGTTTAAATCAAGGGATTATACAAAGTTTGAGACATTTGATGCAGCCTTGGATGAGTTCTATAGCAAAATTGAGAGTCAGAGGGCTGAACAACAGCACAAAGCCAAAGAAAATTCAGCTTCTCAGAAACTTAATAAGATTCGCCAGGATCAGGAAAATCGAGTACATGCATTGAGGAAAGAAGCTGATCACTGTGTTAAGATGGCAGAATTGATAGAATACAACTTGGAAGATGTGGATGCTGCTATATTAGCTGTTCGTGTAGCTCTTGCAAAGGGTATGAACTGGGATGACCTTGCTCGGATGgtgaaggaagaaaagaaagctGGAAACCCAGTAGCTGGTCTCATTGACAAGCTTCATCTTGAGAGGAATTGCATGACTTTACTGTTAAGCAACAATCTTGATGAAATGGATGATGATGAGAAGACACTCCCTGTGGAtaagGTTGAAGTTGATTTAGCTCTCTCAGCACATGCCAATGCTCGGAGGTGGTATGAACTGAAGAAAAAGCAGGAGAGCAAACAGGAGAAGACTGTAACTGCCCATGAAAAGGCTTTTAAAGCTGCAGAGAGAAAGACTCGCCTACAGCTTAATCAGGAAAAAACTGTTGCCTCAATTTCACATATGCGCAAAGTTCACTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAACTATTTGGTTATCAGTGGACGTGATGCACAGCAAAATGAGCTGATAGTGAAGCGTTATATGTCAAAAGGAGATCTatatgTACATGCTGATCTGCATGGAGCTTCTAGTACAGTTGTCAAGAATCACAAGCCTGTGCAACCAGTTCCACCGCTGACCCTAAACCAAGCAGGATGTTTCACAGTCTGCCATAGCCAGGCATGGGATTCGAAAATTGTTACCAGTGCCTGGTGGGTTTATCCTCATCAGGTTAGTAAAACTGCTCCTACAGGCGAATATCTGACGGTAGGGAGTTTCATGATCCGgggaaagaaaaattttcttccaCCACACCCTCTTATCATGGGTTTTGGCCTACTATTTCGCTTGGATGAGAGTTCCTTGGGATCCCATTTAAATGAAAGAAGAGTAAGAGGAGAGGAGGAAGCAATAGATGATTATGAAGAAACTGGACCTCTTGAAGACAAATCTGATTCGGAGTCTGAGCAGGATGTCACTGATATAAAATCTGCCACTGACTCAGAAAGGAATGGTAATTTGTTGGCAGATTCACCCAGACCCCTATCAGAAGAATTTCCTGCAGACTCATCTCAAACTAGTTTGGCTACTGTCAATGCTGAAACTGCAATTTCACAGGATTTTCCTGTGAAAGAGACAAGTACATCGAATATGGTTGATAGGGAGATGTTATCAGACGTTGGTGGAAATGGCTTAGCGTCTGTCACCCCTCAACTTGAGGAACTTATTGATCAAGCTCTGGAACTTGGATCTGTTGCTAAACCAAGTAAAAATTATGGAACTGAGAACTCTCAAATTGATTTAGGCAGTGAGCAACATTTTGAACAAAGCAAAGCTGCAGTAAGGGATAAACCTTATATATCAAAAGCTGAGAGACGAAAGCTTAAAAAAGAACAGAAACATGAAGAAGCAGATTCAAATGTTGAACATGGAAAGGAtgaatcaaaactaaaagataTTTCTGCTAATCTACCTGCAAAAGaagatcaaaatttgaaaaaaggtaGTGGTCAAAAAATCAGCCGTGGGCAGAGGGGCAAACTTAAGAAGATAAAGGATAAGTATGCTGACCAGGATGAGGAAGAAAGGAGCATTCGAATGGCATTGTTGGCTTCTTCCGGAAAATCAATCAAGAAGGAAGAGACAGCATCTGGAAATGAAGCATTGGACAAAGGGAAAAAACCTGGCAGTGGTCCTGCTGAAGCTCCAAAAATATGTTACAAGTGTAAGAAGGCAGGTCACTTATCTCGGGATTGTAAGGAGCAATCAGATGATCAATTGCATAGGCATGCGATTGGTGAAGCtgaagaaaattccaaaatgaCTGCTGTTGACACTTCCCTAGAAGATAGAGTGGCAATGGAAGAAGATGATATTCATGAAAtaggagaagaagagaaagaaaaactaaatgACGTGGATTACTTGACAGGGAATCCACTTCCTAATGACATTCTCTTATATGCTGTTCCTGTCTGTGGTCCTTACGGTGCAGTTCAATCTTACAAATATCGGGTGAAGATAATTCCTGGACCAGCGAAGAAAGGGAAagCTGCAAAAACTGCAATGAACCTATTCAGCCACATGTCAGAAGCAACAAACCGGGAGAAGGAGTTGATGAAAGCCTGTACAGATCCTGAGCTAGTTGCTGCAATTATTGGTAATGTAAAAATATCGGCTGCTGGCCTTACTCagttgaaacaaaaacaaaagaaaggcaAGAAGAGCAGCAAACAAGAGAGTTAG 3411 0.4151 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYVFKLMNSSGVSESGESEKVLLLMESGVRLHTTLYMRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGENANYVVLELYAQGNILLTDSNFTVMTLLRSHRDDDKGLAIMSRHRYPTESCRLFERTTVEKLRTALVSSKEDDNDEAVKANGNGSNASNVAKEKLGTHKGGKSSATLKIVLGEALGYGPALSEHMILDAGLIPSTKVPKDRTWDDATVQALVQAVAKFEDWMQDIISGEIVPEGYILMQNKNLGKDSSISQLGSVSQMYDEFCPILLNQFKSRDYTKFETFDAALDEFYSKIESQRAEQQHKAKENSASQKLNKIRQDQENRVHALRKEADHCVKMAELIEYNLEDVDAAILAVRVALAKGMNWDDLARMVKEEKKAGNPVAGLIDKLHLERNCMTLLLSNNLDEMDDDEKTLPVDKVEVDLALSAHANARRWYELKKKQESKQEKTVTAHEKAFKAAERKTRLQLNQEKTVASISHMRKVHWFEKFNWFISSENYLVISGRDAQQNELIVKRYMSKGDLYVHADLHGASSTVVKNHKPVQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEAIDDYEETGPLEDKSDSESEQDVTDIKSATDSERNGNLLADSPRPLSEEFPADSSQTSLATVNAETAISQDFPVKETSTSNMVDREMLSDVGGNGLASVTPQLEELIDQALELGSVAKPSKNYGTENSQIDLGSEQHFEQSKAAVRDKPYISKAERRKLKKEQKHEEADSNVEHGKDESKLKDISANLPAKEDQNLKKGSGQKISRGQRGKLKKIKDKYADQDEEERSIRMALLASSGKSIKKEETASGNEALDKGKKPGSGPAEAPKICYKCKKAGHLSRDCKEQSDDQLHRHAIGEAEENSKMTAVDTSLEDRVAMEEDDIHEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYGAVQSYKYRVKIIPGPAKKGKAAKTAMNLFSHMSEATNREKELMKACTDPELVAAIIGNVKISAAGLTQLKQKQKKGKKSSKQES 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1183 1136 SUPERFAMILY Retrovirus zinc finger-like domains 950 979 IPR036875 GO:0003676|GO:0008270
Ssu1g1183 1136 SMART c2hcfinal6 960 976 IPR001878 GO:0003676|GO:0008270
Ssu1g1183 1136 Pfam NFACT protein C-terminal domain 1021 1114 IPR021846 -
Ssu1g1183 1136 Coils Coil 842 862 - -
Ssu1g1183 1136 Pfam Zinc knuckle 960 976 IPR001878 GO:0003676|GO:0008270
Ssu1g1183 1136 MobiDBLite consensus disorder prediction 975 997 - -
Ssu1g1183 1136 MobiDBLite consensus disorder prediction 811 827 - -
Ssu1g1183 1136 MobiDBLite consensus disorder prediction 681 749 - -
Ssu1g1183 1136 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Ssu1g1183 1136 MobiDBLite consensus disorder prediction 185 215 - -
Ssu1g1183 1136 Gene3D - 955 1008 - -
Ssu1g1183 1136 MobiDBLite consensus disorder prediction 703 720 - -
Ssu1g1183 1136 ProSiteProfiles Zinc finger CCHC-type profile. 961 976 IPR001878 GO:0003676|GO:0008270
Ssu1g1183 1136 MobiDBLite consensus disorder prediction 975 991 - -
Ssu1g1183 1136 Pfam NFACT N-terminal and middle domains 221 524 - -
Ssu1g1183 1136 Pfam NFACT N-terminal and middle domains 10 180 - -
Ssu1g1183 1136 MobiDBLite consensus disorder prediction 352 371 - -
Ssu1g1183 1136 MobiDBLite consensus disorder prediction 809 957 - -
Ssu1g1183 1136 PANTHER - 3 1124 - -
Ssu1g1183 1136 Pfam NFACT protein RNA binding domain 541 652 IPR008532 -
Ssu1g1183 1136 MobiDBLite consensus disorder prediction 905 921 - -
Ssu1g1183 1136 MobiDBLite consensus disorder prediction 831 878 - -
Ssu1g1183 1136 Coils Coil 364 384 - -
Ssu1g1183 1136 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 3 1124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1183 Ssu-Chr1 25935030 25945855 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1183 K24971 - gmx:100803745 2019.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1183 1 25935030 25945855 Ssu1g1183 1 25935030 25945855 ECH