Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03029 ATGGCACCACCACGAGAGCTTCCGGGGTTTTATTATGATCCTGAGAAGAACAGGTATTTCCCCATCAAAGGCCCCATTCCTGGCTCTTCTTCTAAGCCCACCCTTAAGACACCCCAAACCCCTTCCAATGAGTTACAGGAGAGTGGTAGGAGTTGTTGTGGGAAGCTTAGAAACAGAACCTTGTCTAAGCTGCTTCAGGCTAGGGAGTTGGATGGTCGCCATGTCGTCGACTCTCACTCTTGCAAATATGACTTTGCCGAGGAGTACTGGAAAATTCAAGCATCTAAACCTGTGGTCTGGAGATACCAGGGAACTGATAAGATGGGTGCGTGTGCTTTGGAACACTTGCGTGTCGATGTGCAGACGTTGCAGGGGCAAACTGAAACTGATGTTTTGTTGATAGGCAGCATAAATGGCTCCATGAGTTTTTCTGAAGTTGGAGGGGTTGGGCAATATATTGATGATGGGACAAAATGGAGGGCAGATTGTGTGAGGAATTATGTTGAAGGGAAGACGTTTGAGCATAACGAAGTGCATAAGCCAGTTTTCAGACCTAATCGAGCTGCACTGCTCATGCCCTCCAGAATATCTTGTATAAGATTGGGTCCAAAGTTCTCTCCTCACACAGTGAATGATGGTCCTGTTGGACGTGTTTTATTTACTACTTTGGGATCAGAAACATCAGGTGGATCAGTTTATACTTTGGGTCTTGTTGAACCATTAAATCTTGGACCAGGTATACTTAACACATGGAGCGGACTTGAGGAAATCGCTTCTTTCAGATGTACCCTTTGGACAGCAGAATATGATTATAATAGACATCGTGCTGGAAATGTGATTTTATGTGGGCTTAGAAATGGGGCAATTGTCACTGCAGATTTTCGTGAGAAAAGAGAAAGGCTTTCTGATAGACTTATTACCCATCGGATACCTAATACTTCAGATATGGGAGTTGGAGATTTTAAAAAACAATGGTTCAAGCTCAAAGGAGACATATATCCTTCTCATACAATTAGGATGCCTTCATCTATATCCTCTTTGGTGTCACTTCAGTTTGATGAGCAGTACTTTGTAGCAAGCTCAATGGATGGATCGATGAGGCTTTATGATCATCGTCTACTCCAGAGGGGTGCTGTTCAATGCTATGAAGGGCATGTGAATTCTCATACTCGTATTCAGATTGGTGTCGATCCAGCTGAGAGATTTGTTATGTCAGGTGGAGAGGATTGCAAACTACGGTTATGGAGTCTCAAGTCTGGTGAACTGCTCTTTGAGGACAAGTTCTCTGATTCAATTCTCTCCACCATGTGCTATAAAACACATAGAAGTAAAGAGGAAAACCAATACAAGCGTGACTCCTCGTCTCACGGTGCATGGCTTGGATCACACGAAGGACTGTTTTTTATGCGCTGGTTATGA 1419 0.4376 MAPPRELPGFYYDPEKNRYFPIKGPIPGSSSKPTLKTPQTPSNELQESGRSCCGKLRNRTLSKLLQARELDGRHVVDSHSCKYDFAEEYWKIQASKPVVWRYQGTDKMGACALEHLRVDVQTLQGQTETDVLLIGSINGSMSFSEVGGVGQYIDDGTKWRADCVRNYVEGKTFEHNEVHKPVFRPNRAALLMPSRISCIRLGPKFSPHTVNDGPVGRVLFTTLGSETSGGSVYTLGLVEPLNLGPGILNTWSGLEEIASFRCTLWTAEYDYNRHRAGNVILCGLRNGAIVTADFREKRERLSDRLITHRIPNTSDMGVGDFKKQWFKLKGDIYPSHTIRMPSSISSLVSLQFDEQYFVASSMDGSMRLYDHRLLQRGAVQCYEGHVNSHTRIQIGVDPAERFVMSGGEDCKLRLWSLKSGELLFEDKFSDSILSTMCYKTHRSKEENQYKRDSSSHGAWLGSHEGLFFMRWL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03029 472 SMART WD40_4 375 416 IPR001680 GO:0005515
Spst9g03029 472 SMART WD40_4 331 370 IPR001680 GO:0005515
Spst9g03029 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 382 425 IPR001680 GO:0005515
Spst9g03029 472 Pfam WD domain, G-beta repeat 380 416 IPR001680 GO:0005515
Spst9g03029 472 SUPERFAMILY WD40 repeat-like 276 437 IPR036322 GO:0005515
Spst9g03029 472 Gene3D - 248 459 IPR015943 GO:0005515
Spst9g03029 472 MobiDBLite consensus disorder prediction 21 50 - -
Spst9g03029 472 PANTHER DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATED 276 471 - -
Spst9g03029 472 MobiDBLite consensus disorder prediction 30 50 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g03029 345 441 Miscellaneous Gene Families AT5G08390 28.283 7.06e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g03029 K11799 - gmx:100798753 744.577