Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02962 ATGTCGCTTGAATTTTGGAATAGTGTTCTGCGGGTTTGGGGTTGTGAACGGATTCGGATTTTGATTTGTGTACTGGATGCTGGTAGACGCTCGACTTTGGCATTGTGTTGTGCTGGTTTAGGGTTTGTGAACGGATTCGGATTTTTACTTATAGTTGGGACTGAGTGTCGTGGTCCATTTGCTAAGAGAAGGCATCCATTAGTGGACTCATCTGTTGTTTCAGAGATTAGAAGATGCCTTGAGGAAGGCGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCATCTGACACCTATATATGGAGATGATGAGATAACTCATGTAATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCCCTTACTGGTTCTAAGATTAAGGAATATACCAAGTCATCAGATCAGTTTCGTTTGGTGCTTTCCTCGTTGAGTCCTCTTCATGTTGGGGACCGTAATGTTACTCATGGAGTCTGCGGGATATTGCAATTAAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCGCTTGACTCCAAGGGATATTGCATCTGTTGGTTCTGTTTGTAGGCAGTTGTATGAGATAACAAAAAATGAAAACCTTTGGAGAATGGTATGCCAAAATGCTTGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCGAGGAGACTTGGATGGGGTAGGCTGGCAAGAGAACTGACCACTCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTGCTGTTGAACCTTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAGGGGGTTAACATGCAACCTATGAATGATACGTTTGTGCTGGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAGGTGAGTTGTCCTCCCCCTGGTCGGTGGGGCCACACATTATCTTGTGTTAATGGTTCTCATTTGGTTGTGTTTGGAGGCTGTGGAAGGCAGGGCTTGCTTAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACCTGGCGTGAAATTTCTGGATTAGCACCTCCACTTCCGAGATCTTGGCATAGCTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGAGTACTCTTGAGTGATACTTTTCTTCTTGATCTGTCGATGGAGAAACCTGTCTGGAGAGAGATTCCAGTTGCATGGACTCCACCTTCGCGTCTGGGTCACACACTATCCGTATATGGTGGTAGGAAAATACTGATGTTTGGGGGGCTGGCCAAGAGTGGACCCCTGCGATTTCGCTCCAGTGATGTATTCACGATGGATTTAAGTGAGGAGGAGCCATGCTGGAGATGTGTGACGGGTAATGGAATGCCAGGTGCTGGAAATCCTGGAGGCGTAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTGAGCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCCTCCCAGCTTTACATACTAGATCCGACTGATGAAAAGCCTACATGGAGAATCCTAAACGTACCTGGGCGCCCTCCAAGATTTGCTTGGGGACATAGTACTTGTGTTGTTGGAGGGACAAGGGCTATTGTACTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGATCTCCATGAACTTTCCTTAGCATGCTCTGTCATCTAA 1758 0.4636 MSLEFWNSVLRVWGCERIRILICVLDAGRRSTLALCCAGLGFVNGFGFLLIVGTECRGPFAKRRHPLVDSSVVSEIRRCLEEGVEFQGELLNFRKDGSPLMNRLHLTPIYGDDEITHVIGIQFFTEANIDLGPLTGSKIKEYTKSSDQFRLVLSSLSPLHVGDRNVTHGVCGILQLSDEVLSLKILARLTPRDIASVGSVCRQLYEITKNENLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSCPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGNGMPGAGNPGGVAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSDLHELSLACSVI 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02962 585 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 53 581 - -
Spst9g02962 585 Gene3D - 247 448 IPR015915 GO:0005515
Spst9g02962 585 SUPERFAMILY PYP-like sensor domain (PAS domain) 61 122 IPR035965 -
Spst9g02962 585 SUPERFAMILY F-box domain 166 234 IPR036047 GO:0005515
Spst9g02962 585 CDD F-box_AtADO-like 172 218 - -
Spst9g02962 585 FunFam Putative LOV domain-containing protein 451 584 - -
Spst9g02962 585 SUPERFAMILY Galactose oxidase, central domain 256 570 IPR011043 -
Spst9g02962 585 Gene3D - 449 583 IPR015915 GO:0005515
Spst9g02962 585 Pfam F-box-like 181 219 IPR001810 GO:0005515
Spst9g02962 585 Pfam Galactose oxidase, central domain 269 312 - -
Spst9g02962 585 Pfam Kelch motif 493 540 IPR011498 GO:0005515
Spst9g02962 585 Pfam Kelch motif 426 474 IPR011498 GO:0005515
Spst9g02962 585 Gene3D - 169 217 - -
Spst9g02962 585 FunFam Adagio protein 1 170 217 - -
Spst9g02962 585 FunFam Putative LOV domain-containing protein 246 450 - -
Spst9g02962 585 Gene3D PAS domain 50 133 - -
Spst9g02962 585 Pfam Galactose oxidase, central domain 333 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02962 Spst-Chr9 63748436 63751850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02962 308 564 Acyl Lipid Metabolism Gene Families AT3G05420 25.448 7.87e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02962 K12115 - gmx:100802828 1011.13