Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02960 ATGGAGGGTACCCTCTTCCCCAACAGGCCTGTTTTACCTGCTCCTGCACCAAGACCAACCCAACAGCCTTCAAAATTCAAGCCCACCTTTTTACCTCCACAGTCTCCCCCACCTCCTCCTCCTTCTTTCCAATTTGATTCCCTGCTCCAACATCTTCAGCAAATCTCTTCAGTTCCAATCACCACTCACACCCTCACACTTGTGCCTCCTTTTCGGGATAACACCACCCATAATTCAAAGCACCCCGCTTTAGCTTCTGGCCCCGTAGTTTACCAGGACCAGCTTGATGATGCAAAGTTTGAATTTTTATCCGACAAGGGTAAGTTGTTGCTCAATTCAATTATTGGGTCACCTTTGCATGAATTGAATGGTTTTTTCAACTCTGTTAAGTTTGAGTTGCTTGAGGTTGATTTTCCCAGCCTGTTGAAAGCTTTGGACCGTTCTGGGAACTGGGAGAGGGCTCTTTTGCTCTTTGAATGGGGTTGGTTGAATTTTGGGAGTGAACAAAATTTGAGGTTGGACAATCATGTTGTTGAATTGATGGTTAGGATATTGGGGAGAGAGTCACAGCATTCAATTGCATCCAAGTTGTTTGAATTAATTCCTGTGGAGCTATACTCACTTGATATCCGGGCTTACACCACTGTTCTTCATGCTTATGCTCGCACTGGCAAGTATAAACGGGCTATTGAGTTGTTTGGAAAGATGAAGGAGTTCGGTCTTGATCCAACTTTGGTTACTTACAATGTTATGCTTGATGTTTTTGGCAAGATGGGTCGTTCGTGGAGTAGAATCTTGGAGTTGTTGGCCGAGATGAGGAGTAAAGGGCTTGAGTTTGATGAGTTTACCTGCAGCACTGTGATTTCAGCTTGTGGAAGAGAGGGTATGCTAGATGAAGCTAGGAAGTTTTTCGCTGAATTGAAATTGAATGGCTATAAGCCAGGAACTGTTACATATAATTCTATGCTGCAGGTTTTTGGAAAAGCTGGAATATACACTGAGGCTTTGAGCATCTTGAAAGAAATGGAGGATGATAATTGCCCTCCTGATTCTGTTACTTACAATGAGCTTGCGGCAACATATGTAAGAGCTGGGTTTCTCGATCAAGGGAAGGCTGTGATAGATACAATGACAAGCAAAGGGGTAATGCCAAATGCCATTACTTATACAACTGTAATAGATGCCTATGGTAAGGCGGGTAGGGAGGACGAAGCATTAAGATTGTTCAGCCAAATGAAGGACTCGGGTTGTGCTCCCAATGTATACACGTACAACTCTGTTCTTGCCATGCTAGGCAAGAAGTCAAGAACAGAAGATGTTATTAAGGTTCTCTGTGAGATGAAATTGAATGGATGTGCTCCTAATCGAGCTACATGGAACACCATGCTTGCTGTATGCAGTGAGGAGGGTAAGCGCAATTATGTTAATAAGGTCTTAAGGGAAATGAAAAACTGTGGATTTGAGCCGGACAAAGACACATTCAATACATTGATTAGTGCATATGCTCGGTGTGGATCTGAAGTTGATTCTGCAAAAATGTATGGGGAAATGATTAAAGCAGGCTTTACACCATGTGTAACAACTTATAATTCTCTTCTAAATGCCCTTGCTCGGCAAGGAAATTGGAAAGCAGCAGAATCTGTCATTCTGGACATGCGATGTAAGGGCTTCAAGCCTAACGAAACTTCATACTCACTGTTGCTCCACTGTTATTCCAAGGCTGGGAATGTCAAGGGGATAGAGAAGATTGAGAAAGAAATTTATGATGGTCACGTCTTTCCTAGTTGGATTCTTTTAAGAACCCTTATCCTATCACATCACAAATGCAGACACCTTAGGGGAATGGAAAGGGCATTTGATCAATTGCAAGAGTATGGATACAAACCTGATTTGGTTGTCATTAACTCCATGCTTTCAATGTTTGCCCGGAACAAGATGTTTTCTAAGGCCCATGAAATGATGCATTTTATTCATGAAAGTGAATTGCAGCCAAATCTTTTCACCTATAACTGCCTGATGGATTTGTATGTCCGAGAGGGTGACTGTTGGAAAGCAGAAGAAGTACTCAAGGAAATTCAAAACACTGGTCCAGAGCCAGATGTTGTGTCTTATAATACTGTTGTGAAGGGATTTTGTAGAAAAGGGCTAATGCAGGAGGCTATTAGAGTTCTCTCAGATATGACCACTAAGGGGATTCAACCAACTATAGTTACATACAATACTTTCTTGTCAGGCTATGCAGGGATGGAGTTGTTTGATGAAGCAATTGAAGTGATTAGATTTATGATTGAGCACAATTGCAGGCCAAGTGAACTAACTTACAAGATTGTAGTTGATGGTTACTGTAAAGCAGGGAAGCATGAACAAGCCATGGACTTTGTGTCTAAGATTAAGGAGATTGATATCTCTTTTGATGATCAATCTGTAAAAAGACTATGTTCCTGCATTAGGGAGAAAGTGGGATCTGTTTTGTGA 2475 0.4182 MEGTLFPNRPVLPAPAPRPTQQPSKFKPTFLPPQSPPPPPPSFQFDSLLQHLQQISSVPITTHTLTLVPPFRDNTTHNSKHPALASGPVVYQDQLDDAKFEFLSDKGKLLLNSIIGSPLHELNGFFNSVKFELLEVDFPSLLKALDRSGNWERALLLFEWGWLNFGSEQNLRLDNHVVELMVRILGRESQHSIASKLFELIPVELYSLDIRAYTTVLHAYARTGKYKRAIELFGKMKEFGLDPTLVTYNVMLDVFGKMGRSWSRILELLAEMRSKGLEFDEFTCSTVISACGREGMLDEARKFFAELKLNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDDNCPPDSVTYNELAATYVRAGFLDQGKAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDEALRLFSQMKDSGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKRNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMIKAGFTPCVTTYNSLLNALARQGNWKAAESVILDMRCKGFKPNETSYSLLLHCYSKAGNVKGIEKIEKEIYDGHVFPSWILLRTLILSHHKCRHLRGMERAFDQLQEYGYKPDLVVINSMLSMFARNKMFSKAHEMMHFIHESELQPNLFTYNCLMDLYVREGDCWKAEEVLKEIQNTGPEPDVVSYNTVVKGFCRKGLMQEAIRVLSDMTTKGIQPTIVTYNTFLSGYAGMELFDEAIEVIRFMIEHNCRPSELTYKIVVDGYCKAGKHEQAMDFVSKIKEIDISFDDQSVKRLCSCIREKVGSVL 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02960 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 770 804 IPR002885 -
Spst9g02960 824 Gene3D Tetratricopeptide repeat domain 511 589 IPR011990 GO:0005515
Spst9g02960 824 Pfam Pentatricopeptide repeat domain 208 258 IPR002885 -
Spst9g02960 824 FunFam Pentatricopeptide repeat-containing protein At1g74850, chloroplastic 260 362 - -
Spst9g02960 824 Pfam PPR repeat 282 311 IPR002885 -
Spst9g02960 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Spst9g02960 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 665 699 IPR002885 -
Spst9g02960 824 PANTHER OS03G0856100 PROTEIN 718 799 - -
Spst9g02960 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Spst9g02960 824 Pfam PPR repeat family 629 675 IPR002885 -
Spst9g02960 824 Pfam PPR repeat family 454 503 IPR002885 -
Spst9g02960 824 Pfam PPR repeat family 699 747 IPR002885 -
Spst9g02960 824 Pfam PPR repeat family 384 429 IPR002885 -
Spst9g02960 824 Pfam PPR repeat family 314 355 IPR002885 -
Spst9g02960 824 Pfam PPR repeat family 524 572 IPR002885 -
Spst9g02960 824 MobiDBLite consensus disorder prediction 1 43 - -
Spst9g02960 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Spst9g02960 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Spst9g02960 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 735 769 IPR002885 -
Spst9g02960 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Spst9g02960 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 279 IPR002885 -
Spst9g02960 824 NCBIfam pentatricopeptide repeat 737 771 IPR002885 -
Spst9g02960 824 NCBIfam pentatricopeptide repeat 528 561 IPR002885 -
Spst9g02960 824 NCBIfam pentatricopeptide repeat 632 665 IPR002885 -
Spst9g02960 824 NCBIfam pentatricopeptide repeat 387 421 IPR002885 -
Spst9g02960 824 NCBIfam pentatricopeptide repeat 317 351 IPR002885 -
Spst9g02960 824 NCBIfam pentatricopeptide repeat 246 280 IPR002885 -
Spst9g02960 824 NCBIfam pentatricopeptide repeat 422 455 IPR002885 -
Spst9g02960 824 NCBIfam pentatricopeptide repeat 212 244 IPR002885 -
Spst9g02960 824 NCBIfam pentatricopeptide repeat 493 524 IPR002885 -
Spst9g02960 824 NCBIfam pentatricopeptide repeat 282 315 IPR002885 -
Spst9g02960 824 NCBIfam pentatricopeptide repeat 702 735 IPR002885 -
Spst9g02960 824 NCBIfam pentatricopeptide repeat 773 799 IPR002885 -
Spst9g02960 824 NCBIfam pentatricopeptide repeat 458 490 IPR002885 -
Spst9g02960 824 NCBIfam pentatricopeptide repeat 667 701 IPR002885 -
Spst9g02960 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 700 734 IPR002885 -
Spst9g02960 824 MobiDBLite consensus disorder prediction 29 43 - -
Spst9g02960 824 Gene3D Tetratricopeptide repeat domain 593 717 IPR011990 GO:0005515
Spst9g02960 824 Gene3D Tetratricopeptide repeat domain 718 820 IPR011990 GO:0005515
Spst9g02960 824 Gene3D Tetratricopeptide repeat domain 260 365 IPR011990 GO:0005515
Spst9g02960 824 Gene3D Tetratricopeptide repeat domain 116 259 IPR011990 GO:0005515
Spst9g02960 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Spst9g02960 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Spst9g02960 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Spst9g02960 824 SUPERFAMILY TPR-like 204 547 IPR011990 GO:0005515
Spst9g02960 824 Gene3D Tetratricopeptide repeat domain 366 510 IPR011990 GO:0005515
Spst9g02960 824 Pfam PPR repeat 766 796 IPR002885 -
Spst9g02960 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Spst9g02960 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02960 Spst-Chr9 63738621 63741095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02960 237 799 Glycosyltransferase AT1G05670 24.735 6.31e-54 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02960 K17710 - gmx:100803889 1487.63