Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02959 ATGGAAGTTTCTTCGGAGCCGCCGTCGAACGGCGCCGGCGAAACCATCAGCAAGAATGCACTGAAGCGAGAACTGAAGAACAAACAGAGAGAAGAAGAAAGGAAGCGCAAAAGATTGAAAAGTTTGACTGGAAAACGTGGAAAAGTAAATTGGGCAGCTGAAATGCAGAGGGCTAAGGATATCAAATATGCACCTGTTGATGAGGATGATATGGACCCGACTCAATACCTTGAGAATAGGTTGAAGTATCTTGCAGTTCAAAAGGCAGATGGGAGAAATCCATATCCACACAAATTCTTTGCCACTATGTCCATTGATGAATACATTAAAGAATATGGAGGTTTAAGTGAAGGGCAGCACCTTGAGGATGTTTCTGTGTCTTTGGCTGGTCGGATCATGCACAAGCGCACCTCTGGTTCTAAGCTTGTCTTTTATGACCTGCACGGTGGTGGTTTCAAGGTCCAGGTTATGGCCGATGCGAGTAAATCAGACTTGAATGAGGCTGACTTTTCCAAATTCCATTCTAATGTGAAGCGTGGTGACATAGTTGGTATCACTGGATTTCCCGGAAAAAGTAAGAAGGGTGAACTTAGTATTTTTCCCAAGACTTTTGTGGTGCTGTCTCATTGTTTGCATATGATGCCAAGGCAAAAGTCTGCTGCTTCTGCGGATAATGCAATTTTGAAGAGAAATCCATGGGTACCAGGAAGAACCAGGAATCCTGAAATATATATTTTGAAGGATCAGGAAACTAGATATCGGTTACGTCATTTGGACTTGATGCTGAATCCCGAGGTCCGAGAAATATTTAAGACCAGATCTAAAATCATTTCTTACATTAGGAGTTTCCTTAATGACCTTGATTTCTTGGAGGTTGAAACACCTATGATGAACATGATTGCTGGTGGAGCTGCAGCACGCCCATTTGTAACCCATCACAATGACCTTAACATGAGGCTATTCATGAGGATTGCTCCAGAACTGTATCTTAAGGAGTTGGTTGTTGGTGGACTGGAACGTGTTTATGAAATTGGCAAACAATTTAGGAATGAGGGCATAGATTTGACTCATAATCCTGAGTTTACCACTTGTGAGTTCTATATGGCTTATAAAGACTACAATGACTTAATGGATCTAACTGAGCAAATGTTGAGTGGTATGGTTAAAGAACTTACAAAGGGAAGCTATAAAATCAAGTATCATGCTGATGGGATTGACAAGGAACCTATTGAAATTGATTTTACTCCACCTTTCAGAAGGATTGACATGATTGAAGAATTAGAGAAGATGGCAGACCTAAATATTCCCAAAGACTTGTCCAGTGAGGAAGCTAATCAATATTTGAAAGACGCATGCTTGAAGTATGAGATTAAATGTCCACCTCCTGAGACAACTGCTTGTTTGTTGGATAAACTTGTGGGTCACTTTCTGGAAGAAACATCGAAGCCAGGCTTGACTGAACGTTTTGAATTATTTATCAATAAACATGAACTTTGCAATGCATATACTGAACTGAACGACCCTGTAGTACAACGACAGAGATTTGCAGAACAGGTCAAGGATCGGCAATCAGGTGATGATGAAGCAATGGCCTTAGATGAAACATTTTGTTTGGCTCTGGAGTATGGTTTGCCGCCTACTGGTGGTTGGGGTTTGGGTATTGATCGGTTGACCATGTTATTGACAGATTCGCAGAATATCAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTAAAGATTGA 1743 0.4131 MEVSSEPPSNGAGETISKNALKRELKNKQREEERKRKRLKSLTGKRGKVNWAAEMQRAKDIKYAPVDEDDMDPTQYLENRLKYLAVQKADGRNPYPHKFFATMSIDEYIKEYGGLSEGQHLEDVSVSLAGRIMHKRTSGSKLVFYDLHGGGFKVQVMADASKSDLNEADFSKFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVVLSHCLHMMPRQKSAASADNAILKRNPWVPGRTRNPEIYILKDQETRYRLRHLDLMLNPEVREIFKTRSKIISYIRSFLNDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGLERVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYNDLMDLTEQMLSGMVKELTKGSYKIKYHADGIDKEPIEIDFTPPFRRIDMIEELEKMADLNIPKDLSSEEANQYLKDACLKYEIKCPPPETTACLLDKLVGHFLEETSKPGLTERFELFINKHELCNAYTELNDPVVQRQRFAEQVKDRQSGDDEAMALDETFCLALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPKD 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02959 580 Gene3D - 67 215 IPR012340 -
Spst9g02959 580 PRINTS Lysyl-tRNA synthetase signature 301 317 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Spst9g02959 580 PRINTS Lysyl-tRNA synthetase signature 285 295 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Spst9g02959 580 PRINTS Lysyl-tRNA synthetase signature 348 365 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Spst9g02959 580 PRINTS Lysyl-tRNA synthetase signature 330 343 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Spst9g02959 580 SUPERFAMILY Nucleic acid-binding proteins 71 215 IPR012340 -
Spst9g02959 580 Pfam tRNA synthetases class II (D, K and N) 248 576 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Spst9g02959 580 SUPERFAMILY Class II aaRS and biotin synthetases 248 577 IPR045864 -
Spst9g02959 580 PIRSF LysRS2 478 580 IPR034762 GO:0004824|GO:0005524|GO:0006430
Spst9g02959 580 PIRSF LysRS2 6 481 IPR034762 GO:0004824|GO:0005524|GO:0006430
Spst9g02959 580 Coils Coil 18 45 - -
Spst9g02959 580 CDD LysRS_core 263 578 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Spst9g02959 580 MobiDBLite consensus disorder prediction 19 38 - -
Spst9g02959 580 Gene3D Bira Bifunctional Protein; Domain 2 244 580 IPR045864 -
Spst9g02959 580 MobiDBLite consensus disorder prediction 1 16 - -
Spst9g02959 580 MobiDBLite consensus disorder prediction 1 45 - -
Spst9g02959 580 Hamap Lysine--tRNA ligase [lysS]. 79 579 IPR002313 GO:0004824|GO:0005524|GO:0006430
Spst9g02959 580 FunFam Lysine--tRNA ligase 73 216 - -
Spst9g02959 580 CDD LysRS_N 125 260 IPR044136 GO:0000166
Spst9g02959 580 PANTHER LYSYL-TRNA SYNTHETASE 14 480 - -
Spst9g02959 580 Pfam OB-fold nucleic acid binding domain 126 203 IPR004365 GO:0003676
Spst9g02959 580 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 270 578 IPR006195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02959 Spst-Chr9 63729943 63735969 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02959 K04567 - gmx:100785660 1022.69