Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02947 ATGGCAACTGAGAGTCCAATTAGAATCTCTGAAGCTGGGGGTAAATGGCCGCATAAGGAAGCTACAACTTTCAGTTCAACATCTTGTAACATGGCGACCGAGGATTTGGGTATACTTTTGAATGGCCATAGGTTCCATGGTGGGGGAAAGGATGTGGCACCAAATCGCAGTGGCAGTGCCCCTCCCAGCATGGAAGGTTCATTTCTGGCCATAGAAAACCTCTTACCCCACCAGATCATCACCCAGAATGCAAGCTTTGCAACTCTAAGCAGCACTATGCAAAATTGTGAGTCTGAAGAGCAACTGCGAGCTGATCCAGCTTATTCAGCATATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCACTTACTTCCTGGGAAAATTGCCATCTAGGACGTCATATTGGCAGTTTTAGAAATAATTGGAGAATGTCTACAGTAGATGATAGTGGTAAAAGTTCTTTACATTTGCCTCAGATGACTCTTTCCACACACAAGGAGGAGTCCGAAGATGAATCACACCAACAGCCATACGATGAAGAATTAATTAAGGCAAGTGGAATATGGCGGAGACCTGATGCAGCTTCATTGGCATCTCAGCCCAAAAACGTGGTTGATTTAATTCAGGAAGATTTTCCTCGCACCATGTCACCTGTATATAATAAATCTCTTTCTGAAAGTCACGGAGTAGTGGATAAACAAATTGATTTAGAAGTTGGTTCTAGTTCTTCTCATGACCCCCCTATTACTACAGTAGAGACTGCTAAACCTACTGTAGGTGTGGATGATATAAGGGTGTCATCAGTTGTTGATACCCCTGCCCCAGTTGCAAGCTCATCATCTCTTGAATCCACTGGCAGCATTGGTGTTAGTGACTTAGACATCACAACTGTTGAGTCTCAACTAAAGGCTCTTAGTGTATCTAATCTACCACATTCAGAAAGTCAGAGTTACGAAGAAAAATGGAAGACCAGCTACCAGAGAAATTTTATGCAACTCCCAGGATTCCAGCAACAAAACAATGCATCTGATATTCCAAGTGCCAATTCTCAAAATGTAAATTCTGTGTATGTTGGTAGGGAACAGTTTCCTTTTAATTCAAGCAAATTCTCCAATGTCCAGCCACTACTGCAGTCATCTGGGTTTACACCTCCCCTTTATGCCACAGCAGCTGCGTATATGAACTCAGCAAATCCATTTTACACAAATATGCAGGCCTCAGGTATATATACTCCACAATATGTTGGTGGATACACTGTAAATCCCACAGCTTTCCCTCCATATGTTACTGCATACCCTCCTCATGGTGCCGTACCACTTGTCATTGATGGAGCTACTAGTTCTAGTTATACTCCACTAACACCAGGGGTTTCCACCGGGGGAAACATTTCACATGGAACGGAAATGATACAGACAAACAAGTACCTTGGGCAATTTGGTTTTCCTCTGCAGCCTTCTTTTGGTGATCCCATGTACATGCAATATCATCAGCAACCTTTTGTAGAGGGATATGGTATTTCTGGTCATTTTGATCCACTGGCACCTAGAGCAAGTGTCGTTAGCCAAATTAGCCCTTATGATGCACAAAAAAGACCCAGTACTGGTGCTTATTTGGACGATAAAAAATTACCTGATCATAGATCTGCAACTAATATGAACTCAAGAAGAGGTGGATTATTGATTCCTAGTTATTTTGGACACATGCCAAACATGGGTTTTGTAATGCAGTATCCAAGTTCACCACTTCCTACCCCAGTTTTATCTGGATACCCAGAAGGAAGTCCTGGCCTACTAGGTGGTAGTAATGAAATAAAACTTTCCCCAGCTCCTGGTAGAAATGGAGCCATGATATCAGGATGGCAAGGTCAGAGATCATTTGACAGTGCTCATGACCCCAAAATTGTTAATTTTCTCGAAGACTTAAAATCTGGCAAAGGACGAAGATTTGAGCTATCTGATATTATTGGCCATGTTGTTGAATTTAGCTCTGATCAGCATGGAAGTCGATTTATACAGCAGAAGTTGGAAAGTTGTAGTGTAGAAGAGAAGGCATTGGTGTTTAAGGAGGTTCTTCCACATGCTTCTAAATTAATGACTGATGTATTTGGTAATTATGTAATACAGAAGTTTTTTGAGTATGGAAGCCACGAGCAGAGGAGGGAACTTGCAGATCGACTGGTTGGCCAGATACTACCTTTAAGTCTGCAGATGTATGGATGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGAGCTTGAACAGAAAGCTCAGCTTGTTCATGAGCTAGATGGACATGTTATGAGATGTGTTCGTGACCAAAACGGAAACCATGTAATTCAAAAGTGCATTGAATCGATTCCGACAAAAAAAATTAGTTTTATACTATCTGCATTTTGTGGTCAAGTTGCTATTCTATCAATGCATCCCTATGGATGCCGAGTCATCCAGAGAGTTTTAGAACATTGCACGGATGAGAGTCAATGTCAGTTCATTGTGGATGAAATCTTGGAGTCAGTTTGCGATCTTGCTCAGGACCAGTATGGTAATTATGTTACACAGCATGTCTTGGAGAGAGGAAAGGCTCACGAAAGGAGCCAAATTATCAGCAAGTTGTCAGGACATATTGTTCAATTAAGCCAGCATAAGTTTGCTTCAAATGTTGTAGAAAAATGTTTGGAGTATGGTGATGCCACTGAACGGGAGATGCTAATTGCAGAGATATTTGGGCATGGTGAACAAAGTGATAATTTATTGATAATGATGAAAGATCAATTTGCCAATTATGTGGTCCAGAAGGTCATTGATATCTGTTCTGAAAATCAGCGGGTAATGTTGCTTTCTCAAGTAAGAATTCATGCTCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGTTGGAACATCAATTTGGAGAGAATCAAACTCCTAGCTCATGA 2955 0.4135 MATESPIRISEAGGKWPHKEATTFSSTSCNMATEDLGILLNGHRFHGGGKDVAPNRSGSAPPSMEGSFLAIENLLPHQIITQNASFATLSSTMQNCESEEQLRADPAYSAYYSSNVNLNPRLPPPLTSWENCHLGRHIGSFRNNWRMSTVDDSGKSSLHLPQMTLSTHKEESEDESHQQPYDEELIKASGIWRRPDAASLASQPKNVVDLIQEDFPRTMSPVYNKSLSESHGVVDKQIDLEVGSSSSHDPPITTVETAKPTVGVDDIRVSSVVDTPAPVASSSSLESTGSIGVSDLDITTVESQLKALSVSNLPHSESQSYEEKWKTSYQRNFMQLPGFQQQNNASDIPSANSQNVNSVYVGREQFPFNSSKFSNVQPLLQSSGFTPPLYATAAAYMNSANPFYTNMQASGIYTPQYVGGYTVNPTAFPPYVTAYPPHGAVPLVIDGATSSSYTPLTPGVSTGGNISHGTEMIQTNKYLGQFGFPLQPSFGDPMYMQYHQQPFVEGYGISGHFDPLAPRASVVSQISPYDAQKRPSTGAYLDDKKLPDHRSATNMNSRRGGLLIPSYFGHMPNMGFVMQYPSSPLPTPVLSGYPEGSPGLLGGSNEIKLSPAPGRNGAMISGWQGQRSFDSAHDPKIVNFLEDLKSGKGRRFELSDIIGHVVEFSSDQHGSRFIQQKLESCSVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGSHEQRRELADRLVGQILPLSLQMYGCRVIQKALEVIELEQKAQLVHELDGHVMRCVRDQNGNHVIQKCIESIPTKKISFILSAFCGQVAILSMHPYGCRVIQRVLEHCTDESQCQFIVDEILESVCDLAQDQYGNYVTQHVLERGKAHERSQIISKLSGHIVQLSQHKFASNVVEKCLEYGDATEREMLIAEIFGHGEQSDNLLIMMKDQFANYVVQKVIDICSENQRVMLLSQVRIHAHALKKYTYGKHIVARLEHQFGENQTPSS 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02947 984 Pfam Pumilio-family RNA binding repeat 877 910 IPR001313 GO:0003723
Spst9g02947 984 Pfam Pumilio-family RNA binding repeat 660 694 IPR001313 GO:0003723
Spst9g02947 984 Pfam Pumilio-family RNA binding repeat 842 874 IPR001313 GO:0003723
Spst9g02947 984 Pfam Pumilio-family RNA binding repeat 774 798 IPR001313 GO:0003723
Spst9g02947 984 Pfam Pumilio-family RNA binding repeat 804 839 IPR001313 GO:0003723
Spst9g02947 984 Pfam Pumilio-family RNA binding repeat 921 951 IPR001313 GO:0003723
Spst9g02947 984 Pfam Pumilio-family RNA binding repeat 697 728 IPR001313 GO:0003723
Spst9g02947 984 Pfam Pumilio-family RNA binding repeat 732 765 IPR001313 GO:0003723
Spst9g02947 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 800 836 IPR001313 GO:0003723
Spst9g02947 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 873 908 IPR001313 GO:0003723
Spst9g02947 984 SMART pum_5 764 799 IPR001313 GO:0003723
Spst9g02947 984 SMART pum_5 837 872 IPR001313 GO:0003723
Spst9g02947 984 SMART pum_5 692 727 IPR001313 GO:0003723
Spst9g02947 984 SMART pum_5 656 691 IPR001313 GO:0003723
Spst9g02947 984 SMART pum_5 728 763 IPR001313 GO:0003723
Spst9g02947 984 SMART pum_5 915 950 IPR001313 GO:0003723
Spst9g02947 984 SMART pum_5 800 836 IPR001313 GO:0003723
Spst9g02947 984 SMART pum_5 873 908 IPR001313 GO:0003723
Spst9g02947 984 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 108 974 - -
Spst9g02947 984 MobiDBLite consensus disorder prediction 1 20 - -
Spst9g02947 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 915 950 IPR001313 GO:0003723
Spst9g02947 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 837 872 IPR001313 GO:0003723
Spst9g02947 984 MobiDBLite consensus disorder prediction 537 552 - -
Spst9g02947 984 Gene3D - 637 981 IPR011989 -
Spst9g02947 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 692 727 IPR001313 GO:0003723
Spst9g02947 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 764 799 IPR001313 GO:0003723
Spst9g02947 984 MobiDBLite consensus disorder prediction 533 556 - -
Spst9g02947 984 CDD Pumilio 651 972 IPR033712 GO:0003723
Spst9g02947 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 656 691 IPR001313 GO:0003723
Spst9g02947 984 FunFam Pumilio homolog 1 isoform 2 635 983 - -
Spst9g02947 984 ProSiteProfiles Pumilio RNA-binding repeat profile. 728 763 IPR001313 GO:0003723
Spst9g02947 984 SUPERFAMILY ARM repeat 640 973 IPR016024 -
Spst9g02947 984 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 636 976 IPR033133 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02947 Spst-Chr9 63586280 63595221 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02947 K17943 - gmx:100780168 1746.1