Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02878 ATGCCCATGCTTAAGTGTCTGACTGGTGCTAGCATATACGTACTGACTGGACACCAAGATAATGCAGAGTTTGCTCTTGCAATGTGCCCAACTGAGCCCTATGTTCTTTCAGGAGGAAAGGACAAAACGGTGGTATTGTGGAGTATTGAAGACCATATAACATCTGCTGCTACAGGTGGATCAATTATCAAGCCAAACTCTAAATCTGGCGAAGGCAATGATAAAACTGCTGATAGCCCTTCTGTGGGACCACGAGGTATCTACTGTGGGCATGAGGATACTGTTGAAGATGTGACTTTCTGTCCATCTAGCGCACAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATCTTATGGGATGCACGTGTTGGGTCTAGCCCTGTGGTTAAGGTTGAAAAGGCTCATAATGCTGATCTTCATTGTGTTGATTGGAATCCACATGATGATAATCTGATCCTAACTGGGTCAGCAGATAATTCTGTTCGCATGTTTGATCGCCGCAATCTCACCACTAATGGAGTTGGGTCTCCCATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTCTGTGTTCAGTGGTCTCCGGACAAATCATCTGTATTTGGGAGTTCAGCTGAGGATGGTCTCTTGAACATTTGGGACTATGAGAAGGTTGGTAAAAAGATAGAGCGATCTGGAAAATCAATTAATTCTCCTCCAGGGTTGTTTTTCCAACATGCAGGGCATAGAGATAAAGTAGTTGACTTTCATTGGAATGCATTTGATCCATGGACAATTGTTAGCGTGTCTGATGACTGTGAAAGTACTGGTGGAGGGGGGACATTGCAGATATGGCGCATGAGTGATTTAATCTACAGACCAGAAGACGAGGTATTGGCCGAGCTGGAGAAATTCAAATCTCATGTGGTGGCTTGTGCTTCAAAGTCTGAAAAATGA 939 0.4409 MPMLKCLTGASIYVLTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATGGSIIKPNSKSGEGNDKTADSPSVGPRGIYCGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSINSPPGLFFQHAGHRDKVVDFHWNAFDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVVACASKSEK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02878 312 ProSiteProfiles Trp-Asp (WD) repeats profile. 88 130 IPR001680 GO:0005515
Spst9g02878 312 MobiDBLite consensus disorder prediction 60 84 - -
Spst9g02878 312 SMART WD40_4 81 121 IPR001680 GO:0005515
Spst9g02878 312 SMART WD40_4 126 166 IPR001680 GO:0005515
Spst9g02878 312 SMART WD40_4 175 215 IPR001680 GO:0005515
Spst9g02878 312 SMART WD40_4 8 48 IPR001680 GO:0005515
Spst9g02878 312 SMART WD40_4 233 280 IPR001680 GO:0005515
Spst9g02878 312 PANTHER WD40 REPEAT FAMILY 14 295 - -
Spst9g02878 312 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 182 217 - -
Spst9g02878 312 SUPERFAMILY WD40 repeat-like 11 283 IPR036322 GO:0005515
Spst9g02878 312 MobiDBLite consensus disorder prediction 60 76 - -
Spst9g02878 312 Pfam WD domain, G-beta repeat 134 166 IPR001680 GO:0005515
Spst9g02878 312 Pfam WD domain, G-beta repeat 86 121 IPR001680 GO:0005515
Spst9g02878 312 Pfam WD domain, G-beta repeat 176 215 IPR001680 GO:0005515
Spst9g02878 312 Pfam WD domain, G-beta repeat 12 48 IPR001680 GO:0005515
Spst9g02878 312 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 217 IPR001680 GO:0005515
Spst9g02878 312 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 166 IPR001680 GO:0005515
Spst9g02878 312 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 166 - -
Spst9g02878 312 Gene3D - 5 298 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02878 Spst-Chr9 62933998 62937912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02878 90 250 Miscellaneous Gene Families AT5G08390 26.190 1.04e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02878 K10752 - gmx:100779302 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02878 9 62933998 62937912 Spst9g02878 9 62933998 62937912 ECH