Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02872 ATGGCAAGGAATGTAGCATTTTTCATAGCCATAGCCATGGTTCTGCTACTGCTATATAGCACTGTGCTGACACAAGAACAACCACGAGTATGGTCAGCATTCGAAGCATCTAAAGAAGTAGCTTCAAAGCTTAGTCGAAACCCTCAAACCCTTCCACTAGCCTCAACTGATTATGGCAACATAGTCCACAAAACACCTATAGCAGTATTTGAGCCAAGTTCAGTGAGTGATATCATAGCCTTGATCAGTTTCTCAAACTCTCTTCCCACCCCTTTCACCATAGCCACCAAGGGCAAATCACACTCGGTTCATGGACAAGCCATGAATAACCTAAGTGGGGTGGTGCTGAATATGACTAACCTCCATAGGCCAGGGATTGTGGTGGCTTGTGATGATGGGAAGAGTCCACTATGGTGTTATGCTGATGCAGGTGGTGGACAGTTGTGGAATGATGTGTTGCTGGCAACCCTTCCTCTTGGACTCACCCCTCTTTCTTTGACTGATTATATGTATGCCACCATTGGAGGCACTCTCTCCAATGCTGGAATGGGTGGCATGGCCTTTCAATTTGGACCTCAAATTTCCAATGTTCTTGAGTTGGATGTTGTCACAGGTCAATTTGGGGTGATAACAAGAGCAAGAATACCTTTAGGACCTGCACCTACTAGGGTGAAATGGCTCAGATTGCTTTACAATAACTTCACTGCATTTTCTAGAGATCAAGAACATTTAATTTCCTTCAGTGAAAGTGATGAAAAAACAAAAGCAGATTATGTAGAAGGCATGCTTGTATTGAATCAGCCACCACTGGATCTTTTCTTTTATCCAGATTCTGATCATCAAAGGATAACATCATTGGTAACCCAAAATGGCATCATCTACCTTTTAGAGCTTGCCAAATACTATCACAGCAACTCTCAAGAACATGTCAAAAAGGAAGTTGAAGATTTGGTGAAAGGGTTAAATTTTGTGGCGACATTTGTGTTTGAAAAAGATGTGTCGTACTATGAGTTTGTGAACAGAGTTTATCCATTGGAGCTAATTCTTAGGTCAGAAGGACTTTGGAAAGTTCCTCATCCCTGGTTGAACCTCTGGGTTCCAAGATCTGGAATCTCAGATTTTAATGAAGGAGTTTTCAAAGACATTATTCTTAAGCAAAACATTTCTGGTGGAAGCTTTTTGGTCTACCCCACAAACAGAAACAAGTGGGATGATAGAATGTCACCAGTAACACCAGACGATGATGTTTTCTATATTGTGGATTTTTTGCGTACTGCTACGAGGTTTGATGTGGTGGAGAAATTACAGACACAAAACAAAGAGATTCTACAGTTTTGTAAGGATGCTGGTATTAAGATCAGGGAATACCTTACTGGTAATAAAACACATCAACAATGGGTGGAACACTTTGGTTCAAAATGGAAACTTTTTGCAGATAGAAAAGATGAGTTTGATCCCAATAGAATATTGTCTCCTGGATATGGGATTTTCCAATAA 1497 0.4075 MARNVAFFIAIAMVLLLLYSTVLTQEQPRVWSAFEASKEVASKLSRNPQTLPLASTDYGNIVHKTPIAVFEPSSVSDIIALISFSNSLPTPFTIATKGKSHSVHGQAMNNLSGVVLNMTNLHRPGIVVACDDGKSPLWCYADAGGGQLWNDVLLATLPLGLTPLSLTDYMYATIGGTLSNAGMGGMAFQFGPQISNVLELDVVTGQFGVITRARIPLGPAPTRVKWLRLLYNNFTAFSRDQEHLISFSESDEKTKADYVEGMLVLNQPPLDLFFYPDSDHQRITSLVTQNGIIYLLELAKYYHSNSQEHVKKEVEDLVKGLNFVATFVFEKDVSYYEFVNRVYPLELILRSEGLWKVPHPWLNLWVPRSGISDFNEGVFKDIILKQNISGGSFLVYPTNRNKWDDRMSPVTPDDDVFYIVDFLRTATRFDVVEKLQTQNKEILQFCKDAGIKIREYLTGNKTHQQWVEHFGSKWKLFADRKDEFDPNRILSPGYGIFQ 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02872 498 Gene3D - 223 456 IPR016170 -
Spst9g02872 498 SUPERFAMILY FAD-linked oxidases, C-terminal domain 221 497 IPR016164 GO:0003824|GO:0050660
Spst9g02872 498 Gene3D - 49 117 IPR016167 -
Spst9g02872 498 Gene3D - 457 497 IPR016167 -
Spst9g02872 498 Pfam FAD binding domain 66 205 IPR006094 GO:0050660
Spst9g02872 498 Gene3D - 118 205 IPR016169 -
Spst9g02872 498 Gene3D - 206 222 IPR016169 -
Spst9g02872 498 PANTHER GULONOLACTONE OXIDASE 16 497 - -
Spst9g02872 498 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 221 497 IPR015345 GO:0009690|GO:0019139|GO:0050660
Spst9g02872 498 SUPERFAMILY FAD-binding/transporter-associated domain-like 44 219 IPR036318 GO:0050660
Spst9g02872 498 ProSiteProfiles PCMH-type FAD-binding domain profile. 62 268 IPR016166 GO:0071949
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02872 Spst-Chr9 62899898 62902864 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02872 K00279 - gmx:100793158 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02872 9 62899898 62902864 Spst9g02872 9 62899898 62902864 ECH
Spst3g03406 3 83858244 83861991 Spst9g02872 9 62899898 62902864 PCT