Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02830 ATGGCGTCCGTGTACATACCGGTGCAGAATTCGGAGGAGGAGGTTAGGGTTGCACTCGATCAGCTTCCACGTGACGCCTCGGACATCCTCGACATCCTCAAGGCCGAACAAGCCCCTCTCGATCTCTGGCTCATCATTGCGAGGGAGTACTTCAAGCAGGGAAAAATTGATCAATTTCGCCAGATTTTGGAGGAAGGATCCAGTCCAGAAATTGATGACTATTATGCTGATGTTAGATATGAGAGGATTGCTATCTTAAATGCCCTTGGAGCTTACTATAGCTACCTTGGAAAAATAGAGACAAAACAAAGAGAAAAGGAGGAGCATTTTATTTTGGCAACACAATATTACAATAAAGCATCTAGGATTGACATGCACGAACCCTCCACATGGGTTGGGAAAGATCATGAGCTTGCGTATTTCTGTATTGTGGGTTTTACTGCTGAAACATGTCAGCTTTTGTTAGCAAAGGGGGAAGTAGAACAGGCATCTGCTGCATTTAAGATTGTAATAGATGGAGACCATGATAATGTTCCTGCTCTTTTGGGCCAGTTGCTGCGTGCGGAGTACCTTTACATGGACAAAGTGAAGATTCAACACCATATTTTGGTACAGGCTTGTGTTGAGTTCAATCGCGGACGATACTCTGAGTCACTTGAGTTGTATAAGGTTGGTTGTATGGCCATATTCTTTGCTATTGAGAAGTCAGCTGTGAGACTTGGCATAGGTCTATGTCGCTACAAATTAGGTCAATTTGAAAAGGCTCAGCAGGCATTTGAGCGCGTTTTACATGCAAAAAATGTTGAGGCTCTAGTTGCCCTTGCAATAATGGACTTGCGTACTAATGAAGCTACTGGAATCAGGAAAGGAATGGTAAAAATGCAGAGGGCATTTGAGATATACCCATACTGTGCAATGGCTCTGAATTATCTTGCAAATCATTTCTTTTTCACTGGTCAACATTTTTTAGTTGAGCAACTGACTGAAACTGCGTTGGCTGTTACCAATCATGGGCCGACAAAGTCTCACTCTTACTACAATTTAGCACGCTCATATCATAGCAAGGGAGACTATGACAAAGCTGGGGTGTATTACATGGCATCTGTCAAGGAAGTCAACAAGCCCCATGAATTTGTATTTCCTTATTATGGTTTGGGACAAGTGCAGATAAAGTTGGGCGATTTCAAAAGTGCACTCTCAAACTTTGAAAAGGTCTTGGAGGTGTACCCAGATAATTGTGAGACATTGAAAGCACTTGGGCATATATATGTTCAACTTGGTCAAACTGACAAAGGCCAGGACTTTATTAGGAGAGCTACCAAAATTGATCCCCGTGATGCCCAGGCATTTCTTGAGCTGGGAGAATTGTTAATTCTTTCCGATACAGGAGCTGCACTAGATGCATTCAAAACTGCTCGTACTCTTTTTAAAAAGGGAGGTCAAGAAGTACCAATTGAATTACTCAACAATGTTGGTGTGCTTCAGTTTGAAAGGGGTGAATTTGAGCTTGCTCAACAAACATTTAAGGAGGCTCTAGGTGATGGTATTTGGATATCTTTCATCAATGAGGAAAATAAGTCTTCCATTGATGCTGCTACTTCTACTCTTCAATTCAAGGACAGACAATTATTTCATGACCTTGAAAGCAATGGTCATCGTGTAGAAGTACCTTGGGATAAAGTCACCGTACTTTTTAACCTGGCTAGGTTACTTGAGCAGTTAAATGAATCTGGAACTGCCAGCATATTGTATCGCCTTATCTTGTTCAAGTATCCAGACTATATTGATGCGTGTTTGAGGCTTGCTGCAATTGCAAAAGCTCGGAACAACATTCTATTAAGCATTGAACTGGTATCCTGCAACCTTCTTGCGCTTGTTAATGATGCCTTGAAGGTGAATGACAAGTGTCCCAATGCATTATCTATGCTCGGTGAGTTGGAGCTGAAAAATGATGATTGGGTAAAGGCAAAAGAAACTCTCCGAGCAGCTAGTGATGCAACTGATGGGAAGGACTCATATGCCACTCTTTCTCTGGGGAACTGGAACTACTTTGCAGCAGTTCGCAATGAAAAGAGAAATCCAAAGCTAGAGGCTACTCATTTGGAAAAGGCCAAAGAACTTTATACTAGAGTTTTGATTCAACATTCTTCTAATTTATATGCTGCCAATGGTGCTGCGGTAGTCTTAGCAGAAAAAGGACATTTTGATGTGTCAAAGGATATCTTTACACAGGTTCAAGAAGCTGCCAGTGGTAGTGTTTTTGTCCAGATGCCTGATGTTTGGATAAATCTGGCTCATGTTTATTTTGCTCAGGGGAATTTTGCTTTGGCTGTGAAAATGTACCAAAACTGCTTGCGGAAGTTTTATTATAACACAGACTCTCAAATACTTCTATATTTAGCTCGTACCCATTATGAGGCTGAACAGTGGCAAGACTGTATAAAAACTCTACTGAGAGCCATCCATTTGGCACCCTCAAACTATACTTTGAGGTTTGATGCTGGGGTTGCAATGCAAAAGTTTTCAGCATCAACACTACAGAAAGCAAAGAGGACTGCAGATGAGGTGAGAGCAACTGTTGCCGAGCTGCAAAATGCTGTTCGTGTATTTAGTCAGTTGTCTGCTGCTTCCAACCTTCACATTCATGGGTTTGATGAGAAGAAAATTGACACTCATGTTGGATACTGCAACCACTTACTTTCGGCTGCTAAAGTTCATCTTGAAGCTGCTGAACGTGAAGAGCAGCAAGTACGGCAGAGACAAGAACTTGCTCGTCAGGTTGCATTGGCAGAGGAAGCCCGACGAAAGGCTGAAGAGCAAAGGAAATTTCAGATGGAAAGGAGAAAACAAGAGGATGAGCTAAAGCGAGTGCAACAACAGGAGGAACATTTTAAGCGTGTTAAGGAGCAATGGAAGAGCAGCACTCATTCAAAACGGAGAGAAAGATCAGATGATGAAGAGGGAGGGACTGGTGAGAAGAAGAAAAGAAAAAGTGGAAAGAAGAGAAAGAAGGATAAGCACTCAAAATCACGCTATGACACGGAGGAACCAGAAACTGATATGATGGATGAACAAGAAATGGAGGATGAAGAAGCTGACGTAAACTACAGAGAGGAACCTCAAACTCTGATGAATGATGATGGGGAGGAAAATGCTCAGGGTCTTCTTGCAGCAGCTGGGCTTGAAGATTCCGATGCAGATGAGGATATGGCTGCACCATCCTCAAGCGTAGCTCGACGAAGGCAAGCATTATCAGAATCCGATGATGATGAACCATTACAAAGGCAGTCAAGTCCGGTAAGAGAAAATTCTGCTGATATGCAGGAGAGTGATGGAGAAATCAGAGAGGTGGATAAAACAAATGGAGATGATGCCAGTGATGAGGAGAAACAATACTGA 3399 0.4239 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFRQILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKDHELAYFCIVGFTAETCQLLLAKGEVEQASAAFKIVIDGDHDNVPALLGQLLRAEYLYMDKVKIQHHILVQACVEFNRGRYSESLELYKVGCMAIFFAIEKSAVRLGIGLCRYKLGQFEKAQQAFERVLHAKNVEALVALAIMDLRTNEATGIRKGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRRATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGGQEVPIELLNNVGVLQFERGEFELAQQTFKEALGDGIWISFINEENKSSIDAATSTLQFKDRQLFHDLESNGHRVEVPWDKVTVLFNLARLLEQLNESGTASILYRLILFKYPDYIDACLRLAAIAKARNNILLSIELVSCNLLALVNDALKVNDKCPNALSMLGELELKNDDWVKAKETLRAASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYYNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVALAEEARRKAEEQRKFQMERRKQEDELKRVQQQEEHFKRVKEQWKSSTHSKRRERSDDEEGGTGEKKKRKSGKKRKKDKHSKSRYDTEEPETDMMDEQEMEDEEADVNYREEPQTLMNDDGEENAQGLLAAAGLEDSDADEDMAAPSSSVARRRQALSESDDDEPLQRQSSPVRENSADMQESDGEIREVDKTNGDDASDEEKQY 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02830 1132 FunFam protein CTR9 homolog 193 373 - -
Spst9g02830 1132 MobiDBLite consensus disorder prediction 940 1132 - -
Spst9g02830 1132 Pfam Tetratricopeptide repeat 239 263 IPR019734 GO:0005515
Spst9g02830 1132 SUPERFAMILY TPR-like 698 847 IPR011990 GO:0005515
Spst9g02830 1132 Gene3D Tetratricopeptide repeat domain 294 686 IPR011990 GO:0005515
Spst9g02830 1132 Gene3D Tetratricopeptide repeat domain 693 882 IPR011990 GO:0005515
Spst9g02830 1132 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1127 IPR031101 GO:0006355|GO:0016570
Spst9g02830 1132 Pfam Tetratricopeptide repeat 343 370 IPR019734 GO:0005515
Spst9g02830 1132 Coils Coil 846 866 - -
Spst9g02830 1132 MobiDBLite consensus disorder prediction 1082 1096 - -
Spst9g02830 1132 FunFam Rna polymerase-associated protein ctr9 696 880 - -
Spst9g02830 1132 MobiDBLite consensus disorder prediction 940 994 - -
Spst9g02830 1132 FunFam Protein CTR9 homolog 375 516 - -
Spst9g02830 1132 SUPERFAMILY HCP-like 242 472 - -
Spst9g02830 1132 Gene3D Tetratricopeptide repeat domain 43 286 IPR011990 GO:0005515
Spst9g02830 1132 MobiDBLite consensus disorder prediction 1017 1035 - -
Spst9g02830 1132 SMART tpr_5 413 446 IPR019734 GO:0005515
Spst9g02830 1132 SMART tpr_5 342 375 IPR019734 GO:0005515
Spst9g02830 1132 SMART tpr_5 794 827 IPR019734 GO:0005515
Spst9g02830 1132 SMART tpr_5 236 269 IPR019734 GO:0005515
Spst9g02830 1132 SMART tpr_5 637 670 IPR019734 GO:0005515
Spst9g02830 1132 SMART tpr_5 485 525 IPR019734 GO:0005515
Spst9g02830 1132 SMART tpr_5 379 412 IPR019734 GO:0005515
Spst9g02830 1132 SMART tpr_5 561 594 IPR019734 GO:0005515
Spst9g02830 1132 SMART tpr_5 758 791 IPR019734 GO:0005515
Spst9g02830 1132 Pfam Tetratricopeptide repeat 391 449 - -
Spst9g02830 1132 ProSiteProfiles TPR repeat profile. 379 412 IPR019734 GO:0005515
Spst9g02830 1132 ProSiteProfiles TPR repeat profile. 758 791 IPR019734 GO:0005515
Spst9g02830 1132 Coils Coil 900 967 - -
Spst9g02830 1132 Pfam Tetratricopeptide repeat 763 826 - -
Spst9g02830 1132 FunFam protein CTR9 homolog 544 695 - -
Spst9g02830 1132 SUPERFAMILY HCP-like 43 277 - -
Spst9g02830 1132 SUPERFAMILY TPR-like 486 658 IPR011990 GO:0005515
Spst9g02830 1132 ProSiteProfiles TPR repeat region circular profile. 379 412 - -
Spst9g02830 1132 FunFam protein CTR9 homolog 9 192 - -
Spst9g02830 1132 MobiDBLite consensus disorder prediction 1106 1132 - -
Spst9g02830 1132 ProSiteProfiles TPR repeat profile. 413 446 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02830 K15176 - gmx:100794371 1902.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02830 9 62519202 62539031 Spst9g02830 9 62519202 62539031 ECH