Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02712 ATGGATCACCATGAGGATGAAAGTAACAGCAAACAAGACGATGAGGAAGCTGTTGCTCGCCTTGAGGAAATTAAAAAATCTGTTGAGGCAAAGATGGCTTTACGTCAAAGCAATTTGAATCTGGAAAGGCCTGCTCAAACGGGTGGTTCTATCAACTCAGGAGAAGATGAAAATGACTCGGGATTTTTAAGGACATTGGATTCCAGCATCAAGCGGAACACTGCTGTTATTAAGAAGCTGAAGCAGATCAATGAGGAGCAGCGTGAAGCTCTGATGGATGAGTTGAGAAGTGTCAACTTAAGCAAATTTGTCAGTGAAGCCGTGACTGCAATATGTGATGCCAAACTTAGAAGTTCTGATATACAAGCTGCAGTTCAGGGTAAGCTGTACAAGGACTTTGCACCAAGCCTGATTCAAGGGCTTCTCAAAGTCTTCTCTCCTGGAAAAACTGGTGATGAATCAGAAGCAGACAGAAACTTGAAGGCAATGAAGAAGCGCAGCACTCTGAAACTTCTATTGGAACTTTTTTTTGTTGGAGTAATTGAAGATGGTGGCATTTTTATAAATATCATAAAGGATCTTACCAATGGGGATCAGCTGAAAGATAGGGATGCTGCACAAACGAGTTTGACCCTTCTTTCTAGTTTTGCTCGTCAAGGGAGAATTTTTCTTGGACTTTCTGTTAGTGGGCCAGAAATTCATGAAGAGTTTTTTAAAGGCCTTAACATCACAGCGGATCAGAAGAAAGTTTTCCGGAAAGCATGCTATTCCTTTTATGATGCTGCAGCCGAACTACTTCAGTCTGAGCATTCTTCACTTCGATTGATGGAGCATGAAAATTCTAAGATTTTGAATGCAAAAGGAGAGCTCAGCGATGAAAATATTGCTTCATATGAAAAGCTCCGTAAATCCTATGACCATTTGTACAGAAATGTCTCTTCATTAGCAGAAGCACTTGATATGCAGCCTCCTGTAATGCCAGAGGATGGCCATACAACTAGGGTTACCAGTGGCGAGGAGGGTATTTCTTCTGCTTCTGGTAAAGATTCTTCTGTTGTTGAACCCATATGGGATGATGAAGATACAAGGACTTTCTACGAATGTTTACCTGATCTTAGAGCGTTTGTTCCTGCTGTGCTTTTGGGAGAAACAGAGCCAAAAAGCAGTGAGCAATCTGCAAAGAGTCAAGATCAACCAACTGAAATATTACCTGAATCAGACAAAGGTCAGCAGACCACCCATGAAAGTGGAGAGGTCTCTACAGAGTCCAATGCTTTGCCAGAGGCAGAAACAACAGACAGAGTGAAGGATAAGGAGGAAAAAGACAAGTCTAAAGAATTGGACAGAGAGAAGGAAAAAGAAAAAGATAATGATAAAAAGGGAGAAAATGAAAAAGACAAACTTAGAAGTCTTGAGGGAACAAATTTGGATGCTCTACTGCAGAGGCTTCCGGGTTGTGTGAGCCGGGACCTTATAGATCAATTAACTGTTGAGTTCTGTTATCTAAACTCAAAATCAAATCGGAAAAAGCTTGTGAGGGCTTTGTTCAATGTGCCAAGGACATCACTGGAACTGCTACCATATTATTCACGCATGGTTGCCACGCTCTCAACTTGTATGAAGGATGTCTCCTCCATTCTGTTACAGATGTTGGAGGAGGAATTCAATTTCCTAATAAATAAAAAGGATCAGATGAACATTGAGACAAAGATAAGGAACATCAGGTTCATTGGAGAACTTTGCAAGTTCAAAATTGCCCCTCCTGGCTTAGTCTTCAGTTGTTTGAAGGTATTGATAAGTTGTCAGAACCCCAACCTGCGAGCAGTGGCGACTTGTGTGAGTAGCAGCAACTTCCACGACAACTTCAACAATGAGCAGCACGACAACGAGCAGTGCAACTTGTGCAGCAATAACAATGATGACCAATACAGTGCAGCGGCCTGTTTAGATGATTTTACACATCACAACATTGATGTAGCTTGCAATCTTCTTGAAACATGTGGCCGTTTTCTGTATCGATCTCCAGAAACCACTATACGAATGGCTAACATGTTGGAAATACTGATGCGATTGAAAAATGTAAAAAATTTAGATCCGAGACATAGCACTTTAGTGGAGAATGCATATTACCTTTGCAAACCACCAGAAAGATCTGCACGAGTGGCTAAAGTTCGACCACCATTGCATCAGTATATCAGAAAATTACTTTTCTCTGATCTTGACAAGTCTACCATTGAGCATGTGCTGAGGCAACTGCGTAAATTACCATGGAATGAATGTGAGCCATATCTTTTGAAATGCTTCATGAAGGTCTACAAAGGCAAATATGGTCAGATCCACCTGGTTGCATCTCTTGCTGCTGGATTAAGTCGCTATCATGATGAGTTTGCTGTAGCTATTGTTGACGAGGTTCTGGAGGAGATTAGAGTTGGGCTGGAGTTAAATGACTACGGGATGCAGCAAAGACGCATTGCTTACATGCGTTTCTTAGGGGAACTTTACAACTATGAGCATGTAGACTCTTCTGTTATTTTTGAGACATTATATCTCATTCTCATCTATGGCCACGGGACATCAGAGCCTTCGGGTGACATTATGGAATTTGTTCATGAATCTTGTCAGCAAGATGTACTTGACCCACCTGAAGATTGTTTTCGCATAAGGTTGATCATTACTCTGCTGGAAACTTGCGGGCATTACTTTGATCGTGGTTCTTCTAAGAGGAAACTCGATCGGTTCCTAATACACTTCCAGAGGTATATTTTAAGCAAAGGGGCACTGCCTCTGGACATCGAATTTGACTTACAGTTTACTTCCAAATTGATGTGGGCTACTAATGCTGTAGATATGGGATTGTTTCTTGAGTGGTCTTATGAGCCACATTATGTCTTTGGAAATTGCAGCTTATATAATATAACATCTGGATATTGA 2931 0.4121 MDHHEDESNSKQDDEEAVARLEEIKKSVEAKMALRQSNLNLERPAQTGGSINSGEDENDSGFLRTLDSSIKRNTAVIKKLKQINEEQREALMDELRSVNLSKFVSEAVTAICDAKLRSSDIQAAVQGKLYKDFAPSLIQGLLKVFSPGKTGDESEADRNLKAMKKRSTLKLLLELFFVGVIEDGGIFINIIKDLTNGDQLKDRDAAQTSLTLLSSFARQGRIFLGLSVSGPEIHEEFFKGLNITADQKKVFRKACYSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEGISSASGKDSSVVEPIWDDEDTRTFYECLPDLRAFVPAVLLGETEPKSSEQSAKSQDQPTEILPESDKGQQTTHESGEVSTESNALPEAETTDRVKDKEEKDKSKELDREKEKEKDNDKKGENEKDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSILLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPPGLVFSCLKVLISCQNPNLRAVATCVSSSNFHDNFNNEQHDNEQCNLCSNNNDDQYSAAACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWNECEPYLLKCFMKVYKGKYGQIHLVASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDYGMQQRRIAYMRFLGELYNYEHVDSSVIFETLYLILIYGHGTSEPSGDIMEFVHESCQQDVLDPPEDCFRIRLIITLLETCGHYFDRGSSKRKLDRFLIHFQRYILSKGALPLDIEFDLQFTSKLMWATNAVDMGLFLEWSYEPHYVFGNCSLYNITSGY 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02712 976 SMART if4_15 730 945 IPR003890 GO:0003723|GO:0005515
Spst9g02712 976 SMART if4_15 477 715 IPR003890 GO:0003723|GO:0005515
Spst9g02712 976 Gene3D - 8 327 - -
Spst9g02712 976 Coils Coil 548 568 - -
Spst9g02712 976 Gene3D - 433 719 - -
Spst9g02712 976 MobiDBLite consensus disorder prediction 336 350 - -
Spst9g02712 976 MobiDBLite consensus disorder prediction 429 468 - -
Spst9g02712 976 MobiDBLite consensus disorder prediction 319 352 - -
Spst9g02712 976 MobiDBLite consensus disorder prediction 35 62 - -
Spst9g02712 976 Pfam MIF4G domain 732 936 IPR003890 GO:0003723|GO:0005515
Spst9g02712 976 Pfam MIF4G domain 480 714 IPR003890 GO:0003723|GO:0005515
Spst9g02712 976 SUPERFAMILY ARM repeat 474 718 IPR016024 -
Spst9g02712 976 SUPERFAMILY ARM repeat 725 936 IPR016024 -
Spst9g02712 976 Coils Coil 437 457 - -
Spst9g02712 976 Gene3D - 725 949 - -
Spst9g02712 976 Coils Coil 11 31 - -
Spst9g02712 976 MobiDBLite consensus disorder prediction 384 468 - -
Spst9g02712 976 MobiDBLite consensus disorder prediction 39 62 - -
Spst9g02712 976 MobiDBLite consensus disorder prediction 385 428 - -
Spst9g02712 976 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 13 937 IPR039762 GO:0000184
Spst9g02712 976 FunFam Regulator of nonsense transcripts UPF2 726 945 - -
Spst9g02712 976 FunFam Regulator of nonsense transcripts UPF2 8 327 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02712 K14327 - gmx:100786092 1548.1