Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02690 ATGTTCTCTCTCCTCCGCAAACCCATTCCCCTTTTCTTCCCCTCACAAAGACTATTCCATCTCTCTCCTCTCCTCCGCAACTTTCAACATTCCAATTCCAAACCTCCTTCCCCCGACCTCCTCGACCGCATCTCCCGCCTCCTCCTCCTACGGCGCCCCGCCGCCCTCAACCGCCTCCCCTTCCCCCTCTCCGACCCCCTCATCGACGCCATCCTCCGCCGCCTCCGCCTCCACCCCTCCGCCGCACTCGCTTTCTTCGACCTCGCCGCCCAAGACCCCCACTACCGCCCCCACTCCACCTCCTTCTGCCTCCTCCTCCACATCCTCGCTCGTGCCAAACTCTTCCCGCAAGCCCGCTCCCTCCTCCACCAACTCCTCTCCCTCCACTGCACCAATAACTTCCGCGCCTTTGCCGTCTGCCGCGATGTCGTTTCCATCTACAAGGAATTCGGCTTCTCCCCCACTGTCCTCGACATGCTCCTCAAGGCTTTCGCTGAACGGGGCATGACCCGCCACGCACTCCACGTGTTCGACGAAATGGGTAGGCTCGCCAGGACCCCCAGCCTCAGGTCCTGTAACTGTCTTCTCGCTAGGCTGGTTCGCGCCGGAGAAGGAGGCGCCGCACTGATGGTTTTTCAGCAGGTTTTGAAGATGGGGATTGTGCCTGATGTTTTCATGATTAGTATTGTTGTGAACGCGCATTGTCGGGAAGGAAGTGTGGATTGTGCTGAGAAGTTTGTGATGAAGATGGAGGGAATGGGGTTTGAGGTTAATGTTGTTGTGTACAATGCTTTGGTTGGAGGGTATGCTTGTAAGGGTGATGTGGGAGAAGCTGAGAGGGTGCTGGGTTTGATGTCTAGGAAAGAGGTTGAGAGGAATGTGGTTACTTGGACATTGTTGATGAAAGGTTACTGCAGGCAGGGAAGGGCGGATGAGGCGGAGAGGTTGCTACGGAGAATGGAGGAGGATGAGATGATGGTTGTGGATGATCGCGTGTATGGCGTGCTGGTGGACGGATATTGTCAGGTGGGGAGGATGGACGATGCAGTTAGGATTCGAGATGAGATGGCGAGGGTGGGATTGAGGGTGAATGTGTTTGTTTGTAATTCGTTGGTTAATGGGTATTGTAAGCAGGGCCGGGTTGGTGAGGCCGAAGAGGTGTTTAGGAGGATGGTGGATTGGAATGTGAGACCGGATTGTTATAGCTATAATACGCTGTTGGATGGGTTCTGCAGGGAAGGGAGAATGAGTGAGGCTTTGATGCTTTGCCAGGAAATGTTAAGGGAGGGAATTGATCCTTCTGTTGTGACCTATAACACGATTCTCAAAGGGTTGGTTGATGTGGGGTCTTATGTTGATGCTTTGAGCCTTTGGCATAAGATGGTGAAACGAGATGTGGTGCCGAATGAAGTCAGCTATTGTACTCTGCTTGATTGTTTTTTCAAAATGGGAGATTCTGACGGGGCTATGAAGCTTTGGAAAGAGATTTTAGGCCGGGGTTTTACTAATAGCACTGTTGCATTCAATACAATGATTGGTGGGTTGTGTAAGATGGGGAAAGTGGTGGAGGCAAAGATTGTTTTTGATAGGATGAAGGAACTCGGATGCTCACCAGATGAAGTAACATTTAGGACTTTGAGTGATGGATATTGTAAATCTGGAAGTGTTGTCGAAGCTTTTAGTATTAAAGATATGATGGAAAGACAGACAATTTCTCCTTCTATTGAAATGTACAATTCCCTTATTAATGGGCTTTTTAATTCTAGGAAGTTAACTGATGTTGCTGATCTTCTTGTTGAGATGCGGACAAGAGGACTGTCATCCAATGCTGTTACCTATGGTACGCTTATTTGTGGTTGGTGCAATGAAGGAAAGCTGGATAAAGCTTTTAATTTATATTTTGAGATGATCGAAGGAGGGTTCTCTCCTAACTTGGTGATCTGTAGCAAAATAATCAGCAGTCTTTATAAGAATGATAGAATCAATGAAGCAACTGTGATCCTAGACAGGATGGTGGATTTTGATCTGCTTACAGTTCATAAATGTTCCGATAAGTCTGTTAAAAACGATTTCTTAAGTCTAGAAGCTCAGAGAATTGCAGATTCTCTAGATAAAAGTGCTATATGTAATTCTCTTCCCAACAATATTGTGTACAACATCGCTATCTATGGTCTTGGCAAGTCTGGGAAGATTGATGAAGCAAGACATGTTCTGTCAATTATGTTGTCTAGAGGTTTTCTTCCAGACAATTTCACGTATGGTGCCTTAATTCATGCCTGTTCAGCTGCTGGTGATGTGGATGGTGCTTTCAACTTAAGGAATGAGATGCTGGAGAGAGGTCTTATTCCAAATATTACGACATACAATGCATTAATAAATGGGTTATGTAAATTGGGAAATATGGATCGAGCACTGAGACTTTTCCTTAAACTTCCTCAGAAGGGCTTAGTTCCAAATGTTGTTACCTATAATATACTAATCAGTGGTTACTGTAGGATTGGGGACCTTAATAAAGCCGCTAACTTGAGAGAGAAGATGATAGAAGAAGGGATTTCTTGA 2559 0.4693 MFSLLRKPIPLFFPSQRLFHLSPLLRNFQHSNSKPPSPDLLDRISRLLLLRRPAALNRLPFPLSDPLIDAILRRLRLHPSAALAFFDLAAQDPHYRPHSTSFCLLLHILARAKLFPQARSLLHQLLSLHCTNNFRAFAVCRDVVSIYKEFGFSPTVLDMLLKAFAERGMTRHALHVFDEMGRLARTPSLRSCNCLLARLVRAGEGGAALMVFQQVLKMGIVPDVFMISIVVNAHCREGSVDCAEKFVMKMEGMGFEVNVVVYNALVGGYACKGDVGEAERVLGLMSRKEVERNVVTWTLLMKGYCRQGRADEAERLLRRMEEDEMMVVDDRVYGVLVDGYCQVGRMDDAVRIRDEMARVGLRVNVFVCNSLVNGYCKQGRVGEAEEVFRRMVDWNVRPDCYSYNTLLDGFCREGRMSEALMLCQEMLREGIDPSVVTYNTILKGLVDVGSYVDALSLWHKMVKRDVVPNEVSYCTLLDCFFKMGDSDGAMKLWKEILGRGFTNSTVAFNTMIGGLCKMGKVVEAKIVFDRMKELGCSPDEVTFRTLSDGYCKSGSVVEAFSIKDMMERQTISPSIEMYNSLINGLFNSRKLTDVADLLVEMRTRGLSSNAVTYGTLICGWCNEGKLDKAFNLYFEMIEGGFSPNLVICSKIISSLYKNDRINEATVILDRMVDFDLLTVHKCSDKSVKNDFLSLEAQRIADSLDKSAICNSLPNNIVYNIAIYGLGKSGKIDEARHVLSIMLSRGFLPDNFTYGALIHACSAAGDVDGAFNLRNEMLERGLIPNITTYNALINGLCKLGNMDRALRLFLKLPQKGLVPNVVTYNILISGYCRIGDLNKAANLREKMIEEGIS 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 784 818 IPR002885 -
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 819 852 IPR002885 -
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 749 783 IPR002885 -
Spst9g02690 852 SUPERFAMILY TPR-like 365 534 IPR011990 GO:0005515
Spst9g02690 852 Gene3D Tetratricopeptide repeat domain 358 429 IPR011990 GO:0005515
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Spst9g02690 852 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 398 597 - -
Spst9g02690 852 Gene3D Tetratricopeptide repeat domain 446 558 IPR011990 GO:0005515
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 539 573 IPR002885 -
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Spst9g02690 852 Pfam PPR repeat 327 356 IPR002885 -
Spst9g02690 852 Pfam PPR repeat 218 251 IPR002885 -
Spst9g02690 852 Pfam PPR repeat 289 321 IPR002885 -
Spst9g02690 852 Pfam PPR repeat 604 636 IPR002885 -
Spst9g02690 852 Pfam PPR repeat 253 285 IPR002885 -
Spst9g02690 852 SUPERFAMILY HCP-like 719 849 - -
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 609 643 IPR002885 -
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Spst9g02690 852 Pfam PPR repeat family 364 412 IPR002885 -
Spst9g02690 852 Pfam PPR repeat family 433 481 IPR002885 -
Spst9g02690 852 Pfam PPR repeat family 713 760 IPR002885 -
Spst9g02690 852 Pfam PPR repeat family 783 832 IPR002885 -
Spst9g02690 852 Pfam PPR repeat family 504 552 IPR002885 -
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 574 608 IPR002885 -
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 471 501 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 751 785 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 436 470 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 191 224 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 716 749 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 227 259 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 542 574 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 332 364 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 401 434 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 367 400 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 295 323 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 821 852 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 787 820 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 506 540 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 577 609 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 611 644 IPR002885 -
Spst9g02690 852 NCBIfam pentatricopeptide repeat 260 293 IPR002885 -
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Spst9g02690 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 714 748 IPR002885 -
Spst9g02690 852 Pfam PPR repeat 160 181 IPR002885 -
Spst9g02690 852 Gene3D Tetratricopeptide repeat domain 559 695 IPR011990 GO:0005515
Spst9g02690 852 Gene3D Tetratricopeptide repeat domain 251 357 IPR011990 GO:0005515
Spst9g02690 852 Gene3D Tetratricopeptide repeat domain 696 852 IPR011990 GO:0005515
Spst9g02690 852 Gene3D Tetratricopeptide repeat domain 73 250 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02690 349 852 Glycosyltransferase AT1G05670 28.543 1.40e-63 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02690 - K17964 gmx:100811926 1368.6