Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst9g02649 | ATGGCAGTGGCAAACAGTTTGCCCTGCATTGCTGTCATTATCTCCTTAACATGGATGGTTGAAGCTCGAATTCCAGAGATTTACTCTTGTGCATGGCAAAGTGCTTACTCTACATTCTCCGGAGAATCGATGCTTCCTGCACCGTGGATGGTTCTGGATATGGAGAAGAGTATATACACTTTTCTCACCGTGCACCGTTGGGAGTCACTGAACTGTATGAAATATAGGTTGTCTTCCCTTAGGCCTGTCCATGGAAGGTTGGCTCTGAAATTTCTCAATTGGCTCATAAAGCAACCCAATTTGGAGCTCAAACACGTTACTCATATTATCTGCACTACTACCCACATACTTGTTAGAGCTAGAATGTACAACTTTGCCAAAACAACCTTAAAGCATATGTTACAACTGCCTATTGGTTTAAACTCTGTTTTTGGTGCTTTGATGGAGACATACACCGTTTGCAACTCAAACCCAGCTGTTTTTGACCTCCTGATTAGGGTTTGTTTGAGAGACAAGATGGTTGGAGATGCTGTGCAGACATTCTACTTGATGGGGTTACGAGGACTGATGCCATCTGTATGTACTTGTAACATGGTGTTAGGTTCCCTTGTGAGGGAGCAGAAAGTTGACATGTTTTGGTCCTTTTTCAAACGGATGCTTACCAAAGGGATTTGTCCTAATGTTGCTACATTCAACATATTGTTGAATGCTTTGTGCGAACGGGGTAAGTTTAAAAATGCTGGCTTTCTCTTGAGGAAAATGGAAGAAAGTGGTGTTTATCCAACTGCAGTCACTTACAATACTTTGCTTAACTGGTATTGCAAGAAAGGAAGGTACAAAAAAGCATCTGAGCTGATTGACTCCATGACATCTAAGGGTGTTAAAGCAGATGTTTGTACATATAATGTTTTGATAGATAATTTGTGCAGGGAAAATAGAAGTGCAAAAGGTTATTTATTGTTGAAAAGGATGAGAAGGAATATGGTGTATCCTAATGAGATAACTTATAATACTCTTATTAATGGATTTGTGAAAGAGGGGAAAATTGGACTTGCTGCAAAAGTTTTTGATGAGATGTCATCATTTAATTTATTACCCAACATTATCACTTACAATACTTTAATTGCTGGGCACTGTAGGATGGGCAACTATGGGGAGGCATTGAGATTGATGGATTGTATGGTATCGTGTGGTTTAAGACCTAATGAAGTTACATATGGGGCTCTTTTGAATGGGCTATCCAAGCATGATGAATTTGGTTCGGTATCTAGTGTTCTTGAGAGAATGAGGATGGATGGGGTGGGAGTTGGTCACATTAGTTATACAGCAATGATTGATGGATTGTGTAAAAATGGCATGCTTGAAGAAGCTGTGCAATTGCTGGATGATATGTTAAAAGTTTCTGTCAGTCCTGATGTTGTTACATATTCAGTGCTCATAAATGGATTTTTTAGGGTGGGGAAGATTAATAATGCCAAGGAAATTATGTGTAAGATGTATAAGACTGGACTTGTGCCAAATAGCATTTTATGTTCAACATTAATCTACAATTATTGCAAAATGGGATACTTAGAAGAAGCATTACATGCTTATGCAATTATGAATCTTAGTGGTTATGCTGCTGATCACTTTACATGTAATGTGTTGGTTGCCACTTTCTGTAGATGTGGAAGACTCGAAGAGGCTGAGTATTTTATGGATCACATGAACAGAATGGGTCTTGATCCTAACTCCGTTACTTTTGATTGTGTTATAAATAGTTATGGAAATTCTGGTGATGCATTAAAAGCATTTTCCATGTTTGATAAAATGAAATTGTTAGGCCATTTGCCAAGTCAATTCACGTATGGGGGTCTATTGAAAGGACTTTGCATCAGTGGACATATTAATGAAGCCTGGAAGCTTTTCCGTAGACTTTGTTCCATTCCTAATGCTGTCGATAATGTTATCTTCAACACAATGCTTACTTCTACATGTAGATCTGGAAATCTATCTGATGCAATTGCCCTTATTAATGACATGGTTACAAAAGATTTTCTGCCCGACAATTTTACATACACAAATCTTATTACGGGGCTATGCAAGAAGGGTAAAGTAGTTGATGCACTTCTTTTGTCAGGGAAGGCAATTGAAAAAAAACTATTATCTCCAAATCCTGCTGTGTACACCACCTTAGTCTGTGGTCTTCTTAAGCATGGACATTCAAGAGCAGCTTTGTATATTTTTGAAGAAATGCTAAGCAAAGGTGTGGAGTTTGATACCATAGCATTCAACGTAATTTTAGATCAATACTCAAGGAAAGGGAAAATGTCGGAGGTCAATGATATTGTTTCAACAATGAAGAGTAGAAATTTATGCTTCAATATGGCTACTTACAACATCCTACTACATGGATATGCAATGAGGAATGCAATGGCAAGATGTTTTATATTGTACAAAGACATGATCAGAAACGGTTTTCTACCAGATAAGTTTTCATGGAACTCTCTTATTCTTGGGTATTGCAAGTCCAAATCATTTGATGTTGCTATTAAAATTTTAAGATGGATAACACTGCAAGGATTTGAAACTGATTGTTCTACATTTAACGTTCTTTTTTCCAAGTTCTGTGAAAGGAATGAGATGAAAAAGGCCTTTGATCTGTTAAAACAAATGAATCAGTTTTCAGTTACTCCTAATGTAGATACATACAATGCCCTTTTTAATGGACTCATTAGAACTAGTGATTTTGATAAAGCCCACCGTCTTTTGCAAGCCTTGTTGGAAAGTGGTTCTGTTCCTACGAGTAAACAATATATTACTTTGATCAATGGCATGTGTAGAGTTGGGAACATAAAAGGAGCATTGAAACTTCAAGATGAAATGAAAGCACTTGGTGTCTGCCCCCACAATGTTGCTATGAGTGCTACTGTTAGAGGGCTTGCACATTCAAGGAAGATAGAAAATGCTATTTGGGTTTTTGATTTGATGCTTGAGATGCAAATCATTCCAACTGTTGCTACCTTCACTACATTAATGCACGTATATTGCAAAAAAGCTAAAGTTGCAAAAGCTTTAGAATTGAGGAGCACAATGGAACGTTGTCATTTGAAGCTTGATGTTGTTGCGTATAGTGTTCTAATATCTGGCCTTTGTGCTAATGGAGATATTGAAGCAGCTTTTAAACTTTATGAAGAGATGAAACAAAGAGACCTTTGGCCTAATACCTCTATATACATAGTTCTTCTTGATTCTCTCTGTGCTGGAAATTATCATACCGAAAGTGAAAAACTTTTGAGGGACATACAGGCCAGGGAAATGGTTTCTTTTAATTCATATGGAGGCACGAAAAGATTGAATGAGTTATTGATTATTGCTAGGAAAAAGTTAATTAACTTGAGGTTCAAAATGAAAATGCCAGGAGTTTACGGCAAAACTCCATTTCTTCGAGACGCTGCATTAGCCAATAGGTACTGTCGAAATCTCTTGTTCCTTAAATTGCAAGAGAAATTCAGAAAATCCACTGCACTTGTTCTCCAAGGAGTGAAGCATTCAAAAGTGTTTGCGTACTCCATGTTACCCCATGATGTTGTTTCAAAACATCAGGACTTGATGACTACCGATAGTGAGGATATGTCAAGAATGTAG | 3627 | 0.375 | MAVANSLPCIAVIISLTWMVEARIPEIYSCAWQSAYSTFSGESMLPAPWMVLDMEKSIYTFLTVHRWESLNCMKYRLSSLRPVHGRLALKFLNWLIKQPNLELKHVTHIICTTTHILVRARMYNFAKTTLKHMLQLPIGLNSVFGALMETYTVCNSNPAVFDLLIRVCLRDKMVGDAVQTFYLMGLRGLMPSVCTCNMVLGSLVREQKVDMFWSFFKRMLTKGICPNVATFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKKGRYKKASELIDSMTSKGVKADVCTYNVLIDNLCRENRSAKGYLLLKRMRRNMVYPNEITYNTLINGFVKEGKIGLAAKVFDEMSSFNLLPNIITYNTLIAGHCRMGNYGEALRLMDCMVSCGLRPNEVTYGALLNGLSKHDEFGSVSSVLERMRMDGVGVGHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVSPDVVTYSVLINGFFRVGKINNAKEIMCKMYKTGLVPNSILCSTLIYNYCKMGYLEEALHAYAIMNLSGYAADHFTCNVLVATFCRCGRLEEAEYFMDHMNRMGLDPNSVTFDCVINSYGNSGDALKAFSMFDKMKLLGHLPSQFTYGGLLKGLCISGHINEAWKLFRRLCSIPNAVDNVIFNTMLTSTCRSGNLSDAIALINDMVTKDFLPDNFTYTNLITGLCKKGKVVDALLLSGKAIEKKLLSPNPAVYTTLVCGLLKHGHSRAALYIFEEMLSKGVEFDTIAFNVILDQYSRKGKMSEVNDIVSTMKSRNLCFNMATYNILLHGYAMRNAMARCFILYKDMIRNGFLPDKFSWNSLILGYCKSKSFDVAIKILRWITLQGFETDCSTFNVLFSKFCERNEMKKAFDLLKQMNQFSVTPNVDTYNALFNGLIRTSDFDKAHRLLQALLESGSVPTSKQYITLINGMCRVGNIKGALKLQDEMKALGVCPHNVAMSATVRGLAHSRKIENAIWVFDLMLEMQIIPTVATFTTLMHVYCKKAKVAKALELRSTMERCHLKLDVVAYSVLISGLCANGDIEAAFKLYEEMKQRDLWPNTSIYIVLLDSLCAGNYHTESEKLLRDIQAREMVSFNSYGGTKRLNELLIIARKKLINLRFKMKMPGVYGKTPFLRDAALANRYCRNLLFLKLQEKFRKSTALVLQGVKHSKVFAYSMLPHDVVSKHQDLMTTDSEDMSRM | 1208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 367 | 401 | IPR002885 | - | |
| Spst9g02649 | 1208 | Gene3D | Tetratricopeptide repeat domain | 978 | 1114 | IPR011990 | GO:0005515 | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 437 | 471 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 472 | 506 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 402 | 436 | IPR002885 | - | |
| Spst9g02649 | 1208 | Pfam | PPR repeat family | 366 | 415 | IPR002885 | - | |
| Spst9g02649 | 1208 | Pfam | PPR repeat family | 753 | 800 | IPR002885 | - | |
| Spst9g02649 | 1208 | Pfam | PPR repeat family | 576 | 624 | IPR002885 | - | |
| Spst9g02649 | 1208 | Pfam | PPR repeat family | 439 | 484 | IPR002885 | - | |
| Spst9g02649 | 1208 | Pfam | PPR repeat family | 1033 | 1080 | IPR002885 | - | |
| Spst9g02649 | 1208 | Pfam | PPR repeat family | 647 | 695 | IPR002885 | - | |
| Spst9g02649 | 1208 | Pfam | PPR repeat family | 861 | 905 | IPR002885 | - | |
| Spst9g02649 | 1208 | Pfam | PPR repeat family | 261 | 310 | IPR002885 | - | |
| Spst9g02649 | 1208 | Pfam | PPR repeat family | 191 | 239 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 192 | 226 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 893 | 927 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 998 | 1032 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 788 | 822 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 718 | 752 | IPR002885 | - | |
| Spst9g02649 | 1208 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 82 | 534 | - | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 753 | 787 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 297 | 331 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 1033 | 1067 | IPR002885 | - | |
| Spst9g02649 | 1208 | Gene3D | Tetratricopeptide repeat domain | 569 | 642 | IPR011990 | GO:0005515 | |
| Spst9g02649 | 1208 | Gene3D | Tetratricopeptide repeat domain | 290 | 362 | IPR011990 | GO:0005515 | |
| Spst9g02649 | 1208 | Gene3D | Tetratricopeptide repeat domain | 363 | 429 | IPR011990 | GO:0005515 | |
| Spst9g02649 | 1208 | Gene3D | Tetratricopeptide repeat domain | 500 | 568 | IPR011990 | GO:0005515 | |
| Spst9g02649 | 1208 | Gene3D | Tetratricopeptide repeat domain | 221 | 289 | IPR011990 | GO:0005515 | |
| Spst9g02649 | 1208 | Gene3D | Tetratricopeptide repeat domain | 63 | 220 | IPR011990 | GO:0005515 | |
| Spst9g02649 | 1208 | Gene3D | Tetratricopeptide repeat domain | 643 | 704 | IPR011990 | GO:0005515 | |
| Spst9g02649 | 1208 | Gene3D | Tetratricopeptide repeat domain | 430 | 499 | IPR011990 | GO:0005515 | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 332 | 366 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 227 | 261 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 823 | 857 | IPR002885 | - | |
| Spst9g02649 | 1208 | Pfam | PPR repeat | 329 | 360 | IPR002885 | - | |
| Spst9g02649 | 1208 | Pfam | PPR repeat | 924 | 956 | IPR002885 | - | |
| Spst9g02649 | 1208 | Pfam | PPR repeat | 995 | 1026 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 577 | 611 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 262 | 296 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 858 | 892 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 647 | 681 | IPR002885 | - | |
| Spst9g02649 | 1208 | SUPERFAMILY | HCP-like | 586 | 754 | - | - | |
| Spst9g02649 | 1208 | Gene3D | Tetratricopeptide repeat domain | 705 | 839 | IPR011990 | GO:0005515 | |
| Spst9g02649 | 1208 | Gene3D | Tetratricopeptide repeat domain | 865 | 977 | IPR011990 | GO:0005515 | |
| Spst9g02649 | 1208 | Pfam | PPR repeat | 544 | 574 | IPR002885 | - | |
| Spst9g02649 | 1208 | Pfam | PPR repeat | 825 | 847 | IPR002885 | - | |
| Spst9g02649 | 1208 | Pfam | PPR repeat | 721 | 750 | IPR002885 | - | |
| Spst9g02649 | 1208 | Pfam | PPR repeat | 511 | 535 | IPR002885 | - | |
| Spst9g02649 | 1208 | Pfam | PPR repeat | 971 | 994 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 682 | 717 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 579 | 612 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 649 | 682 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 932 | 962 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 439 | 473 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 791 | 823 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 861 | 894 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 896 | 928 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 264 | 298 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 369 | 403 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 1035 | 1065 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 544 | 577 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 721 | 753 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 474 | 507 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 1001 | 1033 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 334 | 367 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 299 | 332 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 230 | 262 | IPR002885 | - | |
| Spst9g02649 | 1208 | NCBIfam | pentatricopeptide repeat | 194 | 228 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 542 | 576 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 507 | 541 | IPR002885 | - | |
| Spst9g02649 | 1208 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 928 | 962 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst9g02649 | 210 | 772 | Glycosyltransferase | AT1G05670 | 28.042 | 5.44e-64 | 230 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst9g02649 | - | K17964 | gmx:100817407 | 1893.24 |