Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02448 ATGGGCCTATTATACCGACATAATGGGGACACCAGTTATGCCTCATGGGCCTCATTGGGCCCGCTTACTTTGCTGCAGGTTGCTGTTGCGGAGACACAGTCTGCGAGGGCTTTCTACGATGATCTAACGAGTAAAGGAGAGAATCAACCCAAATCGGGGAGGAGTGATAACAGAGGAATCGCTGTAGTGATTCTCGATGCCCTCACAAGGCGACAATGGGTTAGAGAAGAAGATTTGGCGAAAGATCTCAAATTACACACAAAACAACTTCGCCGAACACTGCGGTTTTTTGAAGAGGAGAAGATCATTACTCGAGAATATAGGAGAGAGACAGCGAAAGGAGCAAAATTGTTTAGTGCTGCTACAGCTGCTACAGTTGATGTTCAACTGACTGGAAAAGAGGGAGAAGAGAAGGTCAAGTTGCACACACATTCTTACTGTTGTCTAGATTATGCACAGATATATGATGTGGTTAGGTACAGAATACATCGCATGAAAAAGCTGCTCAAAGATGAATTGGACAACAAGAACACAATAGAGGAATATATCTGTACAAAATGTGGAAAAAGATACAATGCTCTGGATGCATTGCGGTTAGTATCTTTTGAAGATGATGACTTCCATTGTGAAAGTTGTAATGGAAAACTTGAGGTAGAAAGTGATAAGTTTGTGGTTCAAGAAGGGGCTGATGGAGATGATAATGCAAGAAGACGGCGGCATGAAAAGTTAAAAGACATGCTTCAGAAGATGGAGATACAGCTCAAGCCTTTAATGGACCAACTCAGCAGGGTGAAAGATTTGCCTGTTCCAGAATTTGGCAGTCTCCTAGCATGGGAAGCTCGAGCTAGTGCTATGGGGCGTGCAGCCAATGGAGATATGTCTGGTGATTCTAAAATTTCTCAGCTTGGATATAATGGAGCACCAATGCCATATAGTGGGGATACTAAGGTTGTGGTGGACTTCAATGGGACTGAAGGCAACAGACATGATGTTAAGTCTGAAACTGAAAGTACATCTCTAAAGGTTTTGCCACCATGGATGATAAAATCAGGGATGGTTCTTACAAAGGAACAGCGTGGAGAGGTGAAGGAGGAAATAAAGATGAATGGGACTTCAACTTCTTCATCAGCACAGTACTCGGATGACAAGAAATCAACAGTTGATCATGATGATAAGAAAAATATACAGGATGAGTATATCAAGGCTTATTATGCTGCTCTACTTAAACAACAACATGAATTGGAAGCTTCTAGTAAACAAGAATTGTCAAATACACTTGCTGCAAATGATCCTTCTAGCAGTGCTTATAATCGTCAAGTTGGCTTGAAATCAAAACACGAGGAAGATGATGATGGTACTGACTGGGAGGAAGCTCCTGTTGCAGGTACTGGAAATGAAAATTACAAGGTCAATGATTTGAATGTTCAAGCTGATGTTGTTCCAGCTGATGACGATGAAGATGTGGACTGGGAGGAAGGTTGA 1482 0.4211 MGLLYRHNGDTSYASWASLGPLTLLQVAVAETQSARAFYDDLTSKGENQPKSGRSDNRGIAVVILDALTRRQWVREEDLAKDLKLHTKQLRRTLRFFEEEKIITREYRRETAKGAKLFSAATAATVDVQLTGKEGEEKVKLHTHSYCCLDYAQIYDVVRYRIHRMKKLLKDELDNKNTIEEYICTKCGKRYNALDALRLVSFEDDDFHCESCNGKLEVESDKFVVQEGADGDDNARRRRHEKLKDMLQKMEIQLKPLMDQLSRVKDLPVPEFGSLLAWEARASAMGRAANGDMSGDSKISQLGYNGAPMPYSGDTKVVVDFNGTEGNRHDVKSETESTSLKVLPPWMIKSGMVLTKEQRGEVKEEIKMNGTSTSSSAQYSDDKKSTVDHDDKKNIQDEYIKAYYAALLKQQHELEASSKQELSNTLAANDPSSSAYNRQVGLKSKHEEDDDGTDWEEAPVAGTGNENYKVNDLNVQADVVPADDDEDVDWEEG 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02448 493 MobiDBLite consensus disorder prediction 367 381 - -
Spst9g02448 493 MobiDBLite consensus disorder prediction 419 440 - -
Spst9g02448 493 MobiDBLite consensus disorder prediction 479 493 - -
Spst9g02448 493 Coils Coil 80 100 - -
Spst9g02448 493 SMART tfiie3 59 230 IPR002853 GO:0006367
Spst9g02448 493 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT 35 493 IPR039997 -
Spst9g02448 493 MobiDBLite consensus disorder prediction 358 390 - -
Spst9g02448 493 FunFam Transcription initiation factor IIE subunit alpha 167 229 - -
Spst9g02448 493 MobiDBLite consensus disorder prediction 419 493 - -
Spst9g02448 493 SUPERFAMILY Zinc beta-ribbon 172 219 - -
Spst9g02448 493 ProSiteProfiles TFE/IIEalpha-type HTH domain profile. 24 159 IPR017919 -
Spst9g02448 493 Pfam TFIIE alpha subunit 61 114 IPR024550 -
Spst9g02448 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 228 IPR013083 -
Spst9g02448 493 Coils Coil 240 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02448 Spst-Chr9 57835448 57849943 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02448 K03136 - gmx:100779773 817.764