Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02386 ATGAGTGAGGTATTTGAAGGGTACGAGCGTCAATACTGTGAGCTATCGTCGAATCTTTCGCGACAATGCACTGCGGTTTCTACTCTTGATGGAGAACAAAAGAAGCAGAAACTTTCTGATATAAAAGCTGGATTAGATGATGCTGACACATTGATTCGGAAAATGGACCTTGAGGCTAGGAGTTTGCAGCCAAGTATGAAGGCAACTCTTCTTGCCAAGTTAAGGGAATATAAAACTGATTTGAACAATTTGAAGACCGAAGTTAAAAGAGTTACATCAGCTAATGTCAGTTTTGCTGTCCGCGATGAGTTGTTGGAATCAGGAAGTGCTGATACACTGGCGTTATCAAATGATCAAAAGGGGAGACTTCTGATGTCTACTGAGAGACTTAATCAATCCACCGATAGAATAAAGGATAGCAGAAAAACAATGCTGGAGACGGAGGAGCTTGGTGTCTCAATCCTCCAAGACTTGCATCAGCAACGTCAATCCCTACTCCATGCCCATAAGACACTCCATGGGGTGGATGATAACATTAGCAAGAGCAAGAAAATTTTGTCAGCCATGTCAAGAAGGATAAACAGAAACAAATGGATTATTAGCTCCATATTGACAGCCATGGTCCTTGCAATTATAATCATTTTATATTTCAAGCTGACTCGTTAG 666 0.4099 MSEVFEGYERQYCELSSNLSRQCTAVSTLDGEQKKQKLSDIKAGLDDADTLIRKMDLEARSLQPSMKATLLAKLREYKTDLNNLKTEVKRVTSANVSFAVRDELLESGSADTLALSNDQKGRLLMSTERLNQSTDRIKDSRKTMLETEELGVSILQDLHQQRQSLLHAHKTLHGVDDNISKSKKILSAMSRRINRNKWIISSILTAMVLAIIIILYFKLTR 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02386 221 FunFam Vesicle transport through interaction with t-SNAREs homolog 1A 1 99 - -
Spst9g02386 221 Gene3D - 1 97 IPR038407 -
Spst9g02386 221 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 216 - -
Spst9g02386 221 SUPERFAMILY t-snare proteins 6 92 IPR010989 GO:0016020|GO:0016192
Spst9g02386 221 CDD SNARE_Vti1 127 187 - -
Spst9g02386 221 PIRSF Membrin-2 1 218 IPR027027 GO:0005484|GO:0005794|GO:0016192
Spst9g02386 221 SUPERFAMILY SNARE fusion complex 130 189 - -
Spst9g02386 221 FunFam Vesicle transport through interaction with t-SNAREsB 117 197 - -
Spst9g02386 221 Coils Coil 67 94 - -
Spst9g02386 221 Gene3D - 117 197 - -
Spst9g02386 221 Pfam Snare region anchored in the vesicle membrane C-terminus 128 192 - -
Spst9g02386 221 Pfam Vesicle transport v-SNARE protein N-terminus 12 90 IPR007705 GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02386 Spst-Chr9 56550475 56552996 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02386 K08493 - gmx:100801744 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02386 9 56550475 56552996 Spst9g02386 9 56550475 56552996 ECH