Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02338 ATGGCGTCGAGTATAGGTATGATGGATAGCGCATATTTTGTCGGCAGAAACGAGCTTCTCACTTGGATCAACAATCGCCTTCAACTTAACCTCTCTCGCATTGAGGAGGCTGCATCTGGTGCTGTACAATGCCAGATGATGGACATGACATATCCAGGGGTTGTTCCAATGCACAAGGTGAATTTTGATGCAAAGACAGAGTATGATATGATCCAGAATTACAAAGTTCTACAGGATGTGTTCAACAAGCTGAAAATTGAGAAGCATATTGAAGTTGGAAGGCTTGTTAAAGGCCGACCTTTGGACAACTTGGAGTTCCTTCAATGGCTAAAACGTTACTGTGATTCTGTAAATGGAGGCATTATGAATGAGAACTATAATCCTGTTGAGCGTAGGAGTAGTAAGGGTGGAAAGGACCGGACTGTGAAGGGTCTAAAGAACTCAAAATCACTGCAAACGAATACTATGAATCAATCTGGTTCAGGCGATTCACTCAGGTCCAAGCAATTGAGGTCAAGTGGAGGAGCAGAAGGGGCTAATGCTTCAGCAGAGATTCAAGCTTTGTCCAAGCAGGTTTCTGATCTCAAACTCTCAATGGATCACTTGGAAAAAGAAAGAGACTTTTACTTTGCAAAGCTAAGGGATATAGAAATTCTTTGTCAGGCTTCAGAACTGGAAGACGATCCTATGTCTCTAGCAATTAAGAAGATTTTGTATGCTGCTGATGCAAAAGGATCAGCATTAGATGAAGCTCAGGACTTTCTTAATGAAGTCATGCATGGTGGTGAAGGTGAAGGTGAAGGTGAAAATGAAGGTGAAGCAGAAGCAGAAGCTGAAGCCTGA 843 0.4247 MASSIGMMDSAYFVGRNELLTWINNRLQLNLSRIEEAASGAVQCQMMDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVGRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRSSKGGKDRTVKGLKNSKSLQTNTMNQSGSGDSLRSKQLRSSGGAEGANASAEIQALSKQVSDLKLSMDHLEKERDFYFAKLRDIEILCQASELEDDPMSLAIKKILYAADAKGSALDEAQDFLNEVMHGGEGEGEGENEGEAEAEAEA 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02338 280 Gene3D - 183 275 - -
Spst9g02338 280 ProSiteProfiles Calponin homology (CH) domain profile. 13 115 IPR001715 GO:0005515
Spst9g02338 280 SUPERFAMILY Calponin-homology domain, CH-domain 5 132 IPR036872 -
Spst9g02338 280 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 177 247 IPR004953 GO:0008017
Spst9g02338 280 FunFam Microtubule-associated protein RP/EB family member 1B 183 258 - -
Spst9g02338 280 MobiDBLite consensus disorder prediction 146 176 - -
Spst9g02338 280 Gene3D - 6 134 IPR036872 -
Spst9g02338 280 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 6 253 IPR027328 GO:0008017
Spst9g02338 280 SUPERFAMILY EB1 dimerisation domain-like 184 243 IPR036133 GO:0008017
Spst9g02338 280 FunFam RP/EB family microtubule-associated protein 6 134 - -
Spst9g02338 280 MobiDBLite consensus disorder prediction 259 280 - -
Spst9g02338 280 MobiDBLite consensus disorder prediction 131 145 - -
Spst9g02338 280 MobiDBLite consensus disorder prediction 125 182 - -
Spst9g02338 280 Coils Coil 185 205 - -
Spst9g02338 280 Pfam EB1-like C-terminal motif 202 240 IPR004953 GO:0008017
Spst9g02338 280 Pfam Calponin homology (CH) domain 16 114 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02338 Spst-Chr9 54961264 54965999 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02338 K10436 - gmx:100809691 478.789