Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01938 ATGAATGTGAAATCCCATTCTTCCTTCTTCCTCGTGTTTCTTATAGGTATTACTCACACACATGTTTGTCTAGCGGAATGTGATAACGTGAAGGACTATTGCCCTACAAGTGCTCAACCCCAAAAGCAAGCCATATTCATCAATGGCCTCTCCTGTGAGAACCCAGATAACACAAGTGCCCATGATTTCAAGAGCATGGAACTAAGCAAGCCTGGTTCCAGGGACGATTTTGGTTCACTAGTTAAAATTGTTACTGCTTCCAAGTTTGCAGGGCTAAACACTCTTGGCCTTTCAATCGGTAGAAGTGACATTGAAGTGGATGGGCTTGTGAACCTCCACAATCACCCAAGAGCCACTGAGATGATCTATGTGAGGGAAGGAAGATTGGTGGCTGCGTTTCTCAACACCCAAAACCGGCTCTTCCAAAAGACTCTCGATGCTGGCGACGTCTTTGTCATCCCCAAGGGCTTGTTCCACTTCTTCCTCAACCGTGGTGTACAAGTTGCAACCGTGTTCTCAGTTTTCAACAGCCAAAATCCAGGACTAGAATCACTCTCTTCCATACCCTCTGAGTCTGAGAACACTCTGGAATCAGTTGAGAAGATAAAGATGAAGCTCAGTTCACTCTCTGACTCACAACTTCATGGTGAGAGTGATTTGACTTCGGCAGTGCTGGATATCATTCATAACCATCATAGCTCATAA 705 0.4511 MNVKSHSSFFLVFLIGITHTHVCLAECDNVKDYCPTSAQPQKQAIFINGLSCENPDNTSAHDFKSMELSKPGSRDDFGSLVKIVTASKFAGLNTLGLSIGRSDIEVDGLVNLHNHPRATEMIYVREGRLVAAFLNTQNRLFQKTLDAGDVFVIPKGLFHFFLNRGVQVATVFSVFNSQNPGLESLSSIPSESENTLESVEKIKMKLSSLSDSQLHGESDLTSAVLDIIHNHHSS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01938 234 CDD cupin_OxOx 28 187 IPR001929 GO:0030145
Spst9g01938 234 Gene3D Jelly Rolls 25 210 IPR014710 -
Spst9g01938 234 SMART Cupin_1_3 66 203 IPR006045 -
Spst9g01938 234 ProSitePatterns Germin family signature. 108 121 IPR019780 GO:0030145
Spst9g01938 234 Pfam Cupin 77 191 IPR006045 -
Spst9g01938 234 PRINTS Germin signature 176 191 IPR001929 GO:0030145
Spst9g01938 234 PRINTS Germin signature 113 133 IPR001929 GO:0030145
Spst9g01938 234 PRINTS Germin signature 143 163 IPR001929 GO:0030145
Spst9g01938 234 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 24 190 - -
Spst9g01938 234 SUPERFAMILY RmlC-like cupins 53 185 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01938 Spst-Chr9 27813201 27813905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01938 29 205 Miscellaneous Gene Families AT5G20630 35.106 4.23e-31 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01938 - - var:108332215 375.17