Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01937 ATGGAGTCCGACAAAACAACCTTTGCCGCCCTGCTTCTGGGTCCCTGCACGCGATCCTCCTGGGCCCTCGTCTTCCTCCTCTTCACCCTCGTCACTTTTGTCTCCCTCTACCTTCCCTCCAGGCCCGTCTGGCTCCTCGCGGTCCCGTTGCCCGGGCCCCATCCCACAACCTGCGCGGCCTTCTTCCACCACGTTCCGCCCGGGAAGGTTGTCAAGTCCATCGAAGACTTCGGTGGCATCGGCGACGGCACCACTTCCAACACCGAATCGTTCCGGAGGGCGATTCGGTACATGCAGCGCTTCCAGAACCGCGGTGGCTCCCAGCTGAATATCCCCGCAGGGACTTGGCTCACTGGCAGTTTCAATCTCACGAGTAATTTCACGCTTTTTCTTCAACAGGGTGCCGTTATTCTCGCCTCACAGGACCTGAAAGAATGGCCAATAATTGAGGCATTGCCATCTTATGGAAGAGGGAGAGAGAGGCTTGGAGGAAGGCACATTAGCCTTATTCATGGAAATGGCATTAGCAATGTTGTTATTACAGGACAAAATGGGACAGTTGATGGTCAAGGAAAGATGTGGTGGGATCTTTGGTGGAACAGAACATTGGAGCATACAAGAGGGCACCTCCTTGAACTAATAAACTCGGATAATGTTCTCATATCAAACCTCACCTTTCGAAATTCTCCATTTTGGACCATCCATCCTGTTTACTGCAGAAATGTTGTGATAAAAGGGATGACAATCTTGGCTCCCCTTAATGCCCCAAATACTGATGGCATAGACCCAGACTCAAGTTCCAATGTATGTATTGAAGATAACTACATAGAAAGTGGGGATGATCTTGTTGCCATTAAGAGTGGTTGGGATCAATATGGAATCAACGTGGCCCATCCTAGCACAAATATTATAGTGAGGAGAATATCCGGCACTACCCCAACTTGTTCTGGAGTAGGCATAGGTAGTGAAATGTCTGGCGGAATTTCAAATATCACAATTGAGAATTTGCATGTGTGGGACTCCGCAGCTGGTGTTCGGATAAAATCTGACAAAGGTCGAGGAGGCTATATAGTCAATGTTAGTATAAGTGATATAAGAATGGAGAGAGTCAAGATACCCATTAGGTTCAGTAGAGGTTCAAATGACCACCCTGATGATGGGTGGGATCCAAAAGCTGTTCCTACATTCAAAGATATTTTGATCAGTAATGTGGTCAGTGTAAATTCTACAAAAGCTCCAATTTTGGAAGGTGTAGAGGGTTCATCATTTGAAGGTTTATGCTTCAAAAACATTACCCTGCATGGTGTAGCCTTATCCACAAGATGGCGTTGTGAATATGTCTCTGGTTTTGCCACCGAGGTTTTCCCTGTTCCTTGTGTCGAGTTGCGGAACAATAGCTATTCATCGCGGTGTTCACCTTCCTGA 1425 0.4751 MESDKTTFAALLLGPCTRSSWALVFLLFTLVTFVSLYLPSRPVWLLAVPLPGPHPTTCAAFFHHVPPGKVVKSIEDFGGIGDGTTSNTESFRRAIRYMQRFQNRGGSQLNIPAGTWLTGSFNLTSNFTLFLQQGAVILASQDLKEWPIIEALPSYGRGRERLGGRHISLIHGNGISNVVITGQNGTVDGQGKMWWDLWWNRTLEHTRGHLLELINSDNVLISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSSNVCIEDNYIESGDDLVAIKSGWDQYGINVAHPSTNIIVRRISGTTPTCSGVGIGSEMSGGISNITIENLHVWDSAAGVRIKSDKGRGGYIVNVSISDIRMERVKIPIRFSRGSNDHPDDGWDPKAVPTFKDILISNVVSVNSTKAPILEGVEGSSFEGLCFKNITLHGVALSTRWRCEYVSGFATEVFPVPCVELRNNSYSSRCSPS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01937 474 SMART pbh1 266 298 IPR006626 -
Spst9g01937 474 SMART pbh1 216 238 IPR006626 -
Spst9g01937 474 SMART pbh1 328 349 IPR006626 -
Spst9g01937 474 SMART pbh1 239 265 IPR006626 -
Spst9g01937 474 SMART pbh1 300 322 IPR006626 -
Spst9g01937 474 PANTHER PECTIN LYASE-RELATED 43 469 - -
Spst9g01937 474 SUPERFAMILY Pectin lyase-like 63 462 IPR011050 -
Spst9g01937 474 Gene3D - 62 450 IPR012334 -
Spst9g01937 474 Pfam Glycosyl hydrolases family 28 165 448 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01937 Spst-Chr9 27808651 27811645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01937 1 472 Glycoside Hydrolase AT4G33440 65.895 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01937 - - vra:106780727 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01937 9 27808651 27811645 Spst9g01937 9 27808651 27811645 ECH