Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01894 ATGACGCAATCCCAACCCACCGCCGCTACTTCTCCTCCCTCTCGCGTCCTTCTCATCTCCGCCGGCGCTAGCCACTCCGTCGCCCTTCTCTCTGGGAATGTTGTGTGCTCGTGGGGTCGTGGAGAGGATGGACAGTTAGGCCATGGTGATACCGATGATAGGCCTTTACCTACGCAGCTCAGTGCATTGGATGCTCAACAGATAGATTCCATTGCCTGTGGAGCTGATCATACCCTTGCCTACTCCGAGTCACGCAATGAACTCTATAGTTGGGGATGGGGTGATTTTGGAAGGTTGGGTCATGGTAATTCTAGTGATTTGCTCATTCCTCAGCCTATTATAGCATTACAAGGTCTAAGGATAAGGCAAATTGCCTGTGGGGATACTCATTGTTTGGCAGTTACCATGGAAGGCCAGGTTCAGAGTTGGGGGAGGAATCAAAATGGTCAACTTGGACTTGGCACCACAGAGGATTCTCTTGTGCCGCAAAAGATTCAAACATTTCAGGAAGTACCTATCAAAATGGTTGCTGCAGGTGCAGAACACAGTGTAGCTATTGCTGAAAATGGAGAACTGTATGGATGGGGTTGGGGCCGATATGGAAATTTGGGATTGGGAGATAGAAACGATCGCTGGATTCCTGAGAAAGTTTCTTCTGTTGATTGTGACAAGATGGTCATGGTTGCCTGTGGTTGGCGCCATACGATATCTGTTTCATCATCTGGTGGCTTATACACATATGGGTGGAGCAAATATGGCCAGCTAGGTCATGGAAATTTTGAGGATTCTCTTGTGCCTCACAAGCTTGAAGCCTTGAGTGACAAGTTGATCTCTAAGGTATCAGGTGGTTGGAGGCATAGTATGGCACTTACATCTACTGGATTACTGTATGGATGGGGTTGGAATAAGTTTGGACAGGTTGGAGTGGGTGACAATGTTGATCGCTGCTCTCCTGTTCAAGTGAAGTTCCCCCATGATCAGAAAGTAATTCAGATCTCATGTGGGTGGAGACACACAATTGCTGTAACTGACAAGAACAATGTATATTCTTGGGGAAGAGGCACAAATGGGCAACTTGGGCATGGGGATACCATTGACCGGAATTCTCCAAAGATTATTGAGGCATTGAGTGTGGATGGATCTTCTGGGCAGCAAATAGAATCCTCAAACACTGATCTATTGTCAGGGAAAAGCGGTGGCTCCTTATCTAAGAGATATGCAGTTGTTCCGGATGAAACTGTCTCAGGACAAACTGTTAGTTCAAGCAGTGGAGATAGGCTTGATATCAGTGTCCCTGAAAGTGATGTCAAACGGATCCGAGTTTGA 1326 0.4698 MTQSQPTAATSPPSRVLLISAGASHSVALLSGNVVCSWGRGEDGQLGHGDTDDRPLPTQLSALDAQQIDSIACGADHTLAYSESRNELYSWGWGDFGRLGHGNSSDLLIPQPIIALQGLRIRQIACGDTHCLAVTMEGQVQSWGRNQNGQLGLGTTEDSLVPQKIQTFQEVPIKMVAAGAEHSVAIAENGELYGWGWGRYGNLGLGDRNDRWIPEKVSSVDCDKMVMVACGWRHTISVSSSGGLYTYGWSKYGQLGHGNFEDSLVPHKLEALSDKLISKVSGGWRHSMALTSTGLLYGWGWNKFGQVGVGDNVDRCSPVQVKFPHDQKVIQISCGWRHTIAVTDKNNVYSWGRGTNGQLGHGDTIDRNSPKIIEALSVDGSSGQQIESSNTDLLSGKSGGSLSKRYAVVPDETVSGQTVSSSSGDRLDISVPESDVKRIRV 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01894 441 PRINTS Chromosome condensation regulator RCC1 signature 283 301 IPR000408 -
Spst9g01894 441 PRINTS Chromosome condensation regulator RCC1 signature 34 50 IPR000408 -
Spst9g01894 441 PRINTS Chromosome condensation regulator RCC1 signature 138 154 IPR000408 -
Spst9g01894 441 PRINTS Chromosome condensation regulator RCC1 signature 341 362 IPR000408 -
Spst9g01894 441 PRINTS Chromosome condensation regulator RCC1 signature 176 192 IPR000408 -
Spst9g01894 441 PRINTS Chromosome condensation regulator RCC1 signature 88 104 IPR000408 -
Spst9g01894 441 PRINTS Chromosome condensation regulator RCC1 signature 192 206 IPR000408 -
Spst9g01894 441 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 280 290 IPR000408 -
Spst9g01894 441 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 33 84 IPR000408 -
Spst9g01894 441 MobiDBLite consensus disorder prediction 379 398 - -
Spst9g01894 441 SUPERFAMILY RCC1/BLIP-II 162 377 IPR009091 -
Spst9g01894 441 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 294 345 IPR000408 -
Spst9g01894 441 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 242 293 IPR000408 -
Spst9g01894 441 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 176 186 IPR000408 -
Spst9g01894 441 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 138 189 IPR000408 -
Spst9g01894 441 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 332 342 IPR000408 -
Spst9g01894 441 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 19 29 IPR000408 -
Spst9g01894 441 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 86 137 IPR000408 -
Spst9g01894 441 Gene3D - 57 388 IPR009091 -
Spst9g01894 441 Pfam Regulator of chromosome condensation (RCC1) repeat 87 134 IPR000408 -
Spst9g01894 441 Pfam Regulator of chromosome condensation (RCC1) repeat 35 80 IPR000408 -
Spst9g01894 441 Pfam Regulator of chromosome condensation (RCC1) repeat 241 290 IPR000408 -
Spst9g01894 441 Pfam Regulator of chromosome condensation (RCC1) repeat 347 377 IPR000408 -
Spst9g01894 441 Pfam Regulator of chromosome condensation (RCC1) repeat 294 342 IPR000408 -
Spst9g01894 441 Pfam Regulator of chromosome condensation (RCC1) repeat 137 186 IPR000408 -
Spst9g01894 441 Pfam Regulator of chromosome condensation (RCC1) repeat 189 236 IPR000408 -
Spst9g01894 441 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 228 238 IPR000408 -
Spst9g01894 441 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 190 241 IPR000408 -
Spst9g01894 441 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 86 386 - -
Spst9g01894 441 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 346 399 IPR000408 -
Spst9g01894 441 SUPERFAMILY RCC1/BLIP-II 5 219 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01894 Spst-Chr9 25480611 25496642 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01894 - - gmx:100776580 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01894 9 25480611 25496642 Spst9g01894 9 25480611 25496642 ECH