Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01683 ATGGATTTGGATTCTGAATTTGCTGAAGCATTGAACACTGCCTCTTTCTGTACTATTTCTGTGGAGGGTATAGGGTCACACTGCAATGAGCTTCTTTATGATTTAAGTTTTATGGACTGTCATGGTTTCACTTTGAAAGGACAAGGGAGGTATTATTCCCATAAAAATGATTACCTTGAAATTTGCCGATGCTACAAGGCAATATATGAGATTCCATCTATCAAAGAAAATCCTTCCGAATGGATTCCAATCCTGAGGAAAATATGTTGGTACTTGGTTCTATCGCCACATGATCCAATGCAGTCAAGCCTTCTCAATTCCACCTTGGAGGATAGGAATCTGTCCGAGATTCCAAACTTTAAGTATGCCTTCCTAACCTTGTTACTGTTGAAACAGTTGGTCACTATGGAGGTTATCCAGTGGACAACTCTTTGGGATTCATACAAGGATGAGTTTGAGAATGAGAACAACCTTGGAAAGAATTTGGGTGAAAAAGCAGCAGAAGATCTGAGGGAAAGAGTGATTGAACATAATATTCTTGTTATATCAAAATACTATACAAGGATTACTCTAAAGAGACTTGCAGAGCTTTTGTGTCTCAGTGTTCAGGAAGCTGAGAAGCATCTTTCTGATATGGTTGTGTCTAAGGCATTGGTGGCGAAAATTGATAGACCCGTGGGAATAATTTGTTTCCAAAGAGCCAAGGATAGCAACGATGTTCTTAACTCATGGGCAGCGAACTTGGAGAAACTGCTCGATCTTGTGGAGAAGAGTTGCCATCAAATACACAAGGAAACCATGGTGCATAAAGCTGCCTTGAAGTCGATCAACGTTGAATATATTCCATGGCAGTCAAAACCCAGGATGGTTGCTGTCAAATTCAGGAATTTGCGAGAGGAAGATGTTGCTGCCTTTCTAGTAAGAAATTCAATGCTAAGCCGTTCGGTGGAACAAATGTCAAAGCCATTTTTCTCTGCCCACGTTACTAACATGCAATGTCAGAAGAGTAATTAG 1014 0.4024 MDLDSEFAEALNTASFCTISVEGIGSHCNELLYDLSFMDCHGFTLKGQGRYYSHKNDYLEICRCYKAIYEIPSIKENPSEWIPILRKICWYLVLSPHDPMQSSLLNSTLEDRNLSEIPNFKYAFLTLLLLKQLVTMEVIQWTTLWDSYKDEFENENNLGKNLGEKAAEDLRERVIEHNILVISKYYTRITLKRLAELLCLSVQEAEKHLSDMVVSKALVAKIDRPVGIICFQRAKDSNDVLNSWAANLEKLLDLVEKSCHQIHKETMVHKAALKSINVEYIPWQSKPRMVAVKFRNLREEDVAAFLVRNSMLSRSVEQMSKPFFSAHVTNMQCQKSN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01683 337 Pfam PCI domain 129 232 IPR000717 -
Spst9g01683 337 Gene3D - 163 240 IPR036388 -
Spst9g01683 337 Pfam 26S proteasome regulatory subunit RPN5 C-terminal domain 238 270 IPR040896 -
Spst9g01683 337 FunFam 26S proteasome non-ATPase regulatory subunit 12 161 240 - -
Spst9g01683 337 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 165 251 IPR000717 -
Spst9g01683 337 ProSiteProfiles PCI domain profile. 60 236 IPR000717 -
Spst9g01683 337 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 49 269 IPR040134 -
Spst9g01683 337 SUPERFAMILY "Winged helix" DNA-binding domain 164 241 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01683 Spst-Chr9 17161237 17166988 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01683 K03035 - gmx:100793755 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01683 9 17161237 17166988 Spst9g01683 9 17161237 17166988 ECH