Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01675 ATGGCTTCAACTTCAATCACCACTTTCTTCATTTACTCCGAATCCCAATCAAAGTTCCGCAATTTGCTTGGCCACCCACTAATTCATACCCGCAGCAGACCCACATCAATTTCGGTTCAGCCAGCCATGGTTTGCGCCACCCTTTTCTCGACATTCACTTGCTCCCACACCCCTTGCACACCCTCGTCGAGTTTTTCACCGGGAAGAGCTTTATCCAAGTTCCTTTCAGAAAAGGTAGCAGTTTTTCTCATTGGGTCGTTTCTCTTGTCAGGTTGCTTCAGCAAAAGAGCTGCTTTCGCAGAAGCAGCGCCTTCTGTGGGTTCTGGTGTTGTGTTAGAGGAGAAGATGAAGCCCGCAGAAGAGAAAAATGAGGAAGAAAAAAGCGAGGAAGAGAAACGCGGAGAAGAAAAGAGTGAGGAAGAGAAACTCGAGGAAGAGGAGGAAATGTGGGAGAAGGTTTTGGAGAAGGATCCGAGAAATGTTGACGCTCTCAAGGTGGTTTTGTATGGGAAGATTAGGAGAGGGAAGTCCAAGGAGGCTGTGAAGTTCGTGGAGGATTTGATTGCTGCAGAGCCGAAAGAGGTTGAGTGGAGGCTTTTGCTTGCACTTTGTTATGAGACAATGGGGCAACTGAGTAAAGCTAAAAGATTGTTCAGAGAAATCTTGAAGAGAAAGCCTCTTCTACTCAGAGCTTTGCATGGTTTGGCTATGGCAATGCATAAAAACCGTGAAGGTCCTGCTATATTTGAAATGCTAAATAAGGCTCAAGAGTTAGCTTCTCGTGAGAACAGAGTTACCGAGGAGAGAAATATAAGAATCTTAATTGCACAAATGCATGCTGTACAGGGTAATTTGGAGGAGGGCTTACAGAGATTTCAAGAATTGATTGATCAAAATCCTCGAGATTTTAGGCCTTACATTTGCCAGGGAATAATATACAGTCTCTTGGGTAAAAATGAGGAAGCTGCAAAGCAGTTTGAAACATATCAAACTCTTGTGCCTGAAGAATTTCCTCAGAGGAGATTTCTGGATGATGTTGCCATAACAGCCAAAAGAACATCCCTTGAAAAGTTTAAGAAAGCATTTAGAAATCAATTTTCTTATCGGTAA 1110 0.4342 MASTSITTFFIYSESQSKFRNLLGHPLIHTRSRPTSISVQPAMVCATLFSTFTCSHTPCTPSSSFSPGRALSKFLSEKVAVFLIGSFLLSGCFSKRAAFAEAAPSVGSGVVLEEKMKPAEEKNEEEKSEEEKRGEEKSEEEKLEEEEEMWEKVLEKDPRNVDALKVVLYGKIRRGKSKEAVKFVEDLIAAEPKEVEWRLLLALCYETMGQLSKAKRLFREILKRKPLLLRALHGLAMAMHKNREGPAIFEMLNKAQELASRENRVTEERNIRILIAQMHAVQGNLEEGLQRFQELIDQNPRDFRPYICQGIIYSLLGKNEEAAKQFETYQTLVPEEFPQRRFLDDVAITAKRTSLEKFKKAFRNQFSYR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01675 369 Pfam Tetratricopeptide repeat 173 227 - -
Spst9g01675 369 MobiDBLite consensus disorder prediction 114 139 - -
Spst9g01675 369 Coils Coil 119 149 - -
Spst9g01675 369 PANTHER TPR REPEAT-CONTAINING PROTEIN PA4667 99 341 - -
Spst9g01675 369 MobiDBLite consensus disorder prediction 114 146 - -
Spst9g01675 369 SMART tpr_5 303 336 IPR019734 GO:0005515
Spst9g01675 369 SMART tpr_5 269 302 IPR019734 GO:0005515
Spst9g01675 369 SMART tpr_5 195 228 IPR019734 GO:0005515
Spst9g01675 369 Gene3D Tetratricopeptide repeat domain 101 361 IPR011990 GO:0005515
Spst9g01675 369 SUPERFAMILY TPR-like 144 335 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01675 Spst-Chr9 16986199 16990144 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01675 - - gmx:100795327 550.821