Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01642 ATGTTGGCCTTCTCCAAGTTCAGGAAAGCAACGAAGATCCCCTGCGTAATCCGTCGAAACCTAAAGCCTCCTGCCTACTTCCGGAGATTTTCCTCTTGGTCCAAGGAACCTCTTTCTTCGAACCCGCAATTGCCTCTTCGTTTCTGCATCTGGGTGGCACTCAAGTTCGAGACTTTATCCACCAGCAATTACAGCGGCTTGGTAAGTGAGGTCCTTTGCACCAACAACTGGTTTTCCCTTTACTGGGAAGCCCTCGAGCATCTTAAGAAATCTGGGATTTTGATAACTTCTGATTTGGTTAGGGTTTTGATTGGGGCGTATTGGCGAGTAGGTCTCGCCGAAAAGGCTATAGAATCGTTCAGTAGAATGGGTGAGCTTGGTTGCATACCTGATGCTCGTGCTTATAACACCATTTTGGATATTGCGTTGAAGAAAGAGTTGTTTGTTTTGGTACTTGCGGTGTATAATATGATGCTTAAGTCCAATTGTTCTCCTAATGAGCACACCTATAATAAGTTGATTAGTGGGTTTTGTAGAAATGATGATGTTAAGGGTGCACTTGAGATTGTCGATGAGATGGGCGTAAAGGATGTAGCGCCGAGTGCGAAGACATTTTTCGCTATTTTTTCTGGTCTGTGTCATGGTAAGAGGGTAGATGAGGCACGCAGGTTGTTTAATTTGACAGAAGAAAGAGGGTGGAAGCCTGATTTGATGTCTTATTGTGTTTTTATTAATGGGTATTGCAAGTTGGGGAGGTTAGATGAAGCCATTTCGATTATGCGATTGTTAGAAAATGAAGGGTTAACCCTTGAACTAAAGGGCTATAGTCCTCTGATTGCTGGTTTTTTTAGGGAAAAGAGATACCAAGAAGCGCATTCGTGGTATGGAAGGATGCTTAAGAATGGTATTGTTCCAGATGTTGTTTTGTACACAATTATGATACGGGGTTTGTCGAGCGAGGGCAGGGTTGGTGAAGCTGTGAAGATGTTAGGTGAGATGACCCAGAGAGGAATAGTTCCTGATGCTGTTTGTTACAATGAAGTGATTAAAGGTCTTTGTGACGCTGGTCTTTTGGATCGAGCACAATCTCTCCAACTTGAAATTTCTGAACGTGAAGGGTTTCATAATGTTTGCACACATACCATTCTCATCTGTGACCTTTGTAAGAGAGGAATGGTTAATGAGGCACAAGAAATATTTAATCAGATGGAGAAGCTTGGATGTTTGCCTTCAGTTGTGACCTTCAATGCTCTCATAAATGGACTGTGCAAGGCTGGTAAACTGGAGGAGGCACACCTTTTATTGTACAAGATGGAGATTGGGAGAAGTCCTTCATTATTCTTCCGTCTTTCTCAGGGTTCTAGTCAGGTCTCAGATAGTGCTAGTCTCCAGAAAAAGGTGGAGCAAATGTGTGAGGCTGGACAACTTGTGGATGCGTACAAGTTTCTCATACAACTTGCCGACAGTGGGGTTGTGCCTGACATTGTGACGTACAATGTTCTAATCAACGGCCTTTGCAAGGCTTCTAAGGTCAATGGTGCTTTAAAGCTTTTCAAGGATATGCAAAACAAGGGGCTATCACCTGACTCTGTTACTTATGGGACACTGATTGATGGGCTTTTCAGGCTTGGCAGAGAAGAAGACGCCTTTAAGATGTATGAGCATATGTTGAAGCATGGGTGTCAACCTAGCTTTGAAGTTTATAAAGCACTTATGACTTGGTTGTCTAGAAATAGGAAGGTCTCACAGGCCTTCGGTCTTTATTTGGATTTTTTAAAGACTCTTCGTGGAAGGGAAGACAATTCAATCAATGCTTTAGAGGGATATTTTATCAAAGGAGAAGTGGAACAAGCAATTCAACGTTTACTTGAACTGGACTTCAGGTTCAGAGATTTTAATTTAGCTCCATATACCATTCTACTTATTGGGTTTTGTCAGGCAGAAAAATTAGACGAAGCATTAATTATATTTTCTGTTCTTGATAAGTTTAATATCAATATCAATCCTCCAAGCTGTGTACATTTGATCGAAGGACTCTGTAGAAAAGGAAGGCTGGATGATGCGGTAAGCATCTTCCTTTACACTCTTGACAAAGGTTTCATGTTGCGGCGAAGAATTTGTAAGCGGCTCCTCATGTGTCTTCTTCATTCCCCAGATAAAAGTCATTATGCTATTGATCTTGTTCGTAGGATGGAGTCTACTGGATACCGCATAAATTATTGGGTTGGTAAAGGATGCATCGTGTACAAAGCAGGAAAAATTCATTCTCTAAGAGATTCCATTACACTGACTGATCAAGATAAATAA 2307 0.4166 MLAFSKFRKATKIPCVIRRNLKPPAYFRRFSSWSKEPLSSNPQLPLRFCIWVALKFETLSTSNYSGLVSEVLCTNNWFSLYWEALEHLKKSGILITSDLVRVLIGAYWRVGLAEKAIESFSRMGELGCIPDARAYNTILDIALKKELFVLVLAVYNMMLKSNCSPNEHTYNKLISGFCRNDDVKGALEIVDEMGVKDVAPSAKTFFAIFSGLCHGKRVDEARRLFNLTEERGWKPDLMSYCVFINGYCKLGRLDEAISIMRLLENEGLTLELKGYSPLIAGFFREKRYQEAHSWYGRMLKNGIVPDVVLYTIMIRGLSSEGRVGEAVKMLGEMTQRGIVPDAVCYNEVIKGLCDAGLLDRAQSLQLEISEREGFHNVCTHTILICDLCKRGMVNEAQEIFNQMEKLGCLPSVVTFNALINGLCKAGKLEEAHLLLYKMEIGRSPSLFFRLSQGSSQVSDSASLQKKVEQMCEAGQLVDAYKFLIQLADSGVVPDIVTYNVLINGLCKASKVNGALKLFKDMQNKGLSPDSVTYGTLIDGLFRLGREEDAFKMYEHMLKHGCQPSFEVYKALMTWLSRNRKVSQAFGLYLDFLKTLRGREDNSINALEGYFIKGEVEQAIQRLLELDFRFRDFNLAPYTILLIGFCQAEKLDEALIIFSVLDKFNININPPSCVHLIEGLCRKGRLDDAVSIFLYTLDKGFMLRRRICKRLLMCLLHSPDKSHYAIDLVRRMESTGYRINYWVGKGCIVYKAGKIHSLRDSITLTDQDK 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01642 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Spst9g01642 768 NCBIfam pentatricopeptide repeat 413 439 IPR002885 -
Spst9g01642 768 NCBIfam pentatricopeptide repeat 239 268 IPR002885 -
Spst9g01642 768 NCBIfam pentatricopeptide repeat 168 201 IPR002885 -
Spst9g01642 768 NCBIfam pentatricopeptide repeat 378 411 IPR002885 -
Spst9g01642 768 NCBIfam pentatricopeptide repeat 531 564 IPR002885 -
Spst9g01642 768 NCBIfam pentatricopeptide repeat 275 307 IPR002885 -
Spst9g01642 768 NCBIfam pentatricopeptide repeat 308 342 IPR002885 -
Spst9g01642 768 NCBIfam pentatricopeptide repeat 208 236 IPR002885 -
Spst9g01642 768 NCBIfam pentatricopeptide repeat 496 530 IPR002885 -
Spst9g01642 768 NCBIfam pentatricopeptide repeat 134 167 IPR002885 -
Spst9g01642 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Spst9g01642 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Spst9g01642 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
Spst9g01642 768 Gene3D Tetratricopeptide repeat domain 442 587 IPR011990 GO:0005515
Spst9g01642 768 Gene3D Tetratricopeptide repeat domain 275 369 IPR011990 GO:0005515
Spst9g01642 768 Gene3D Tetratricopeptide repeat domain 603 767 IPR011990 GO:0005515
Spst9g01642 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Spst9g01642 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Spst9g01642 768 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 100 444 - -
Spst9g01642 768 Pfam PPR repeat 637 660 IPR002885 -
Spst9g01642 768 Pfam PPR repeat 275 303 IPR002885 -
Spst9g01642 768 Pfam PPR repeat 674 694 IPR002885 -
Spst9g01642 768 Pfam PPR repeat 102 128 IPR002885 -
Spst9g01642 768 Pfam PPR repeat family 376 424 IPR002885 -
Spst9g01642 768 Pfam PPR repeat family 305 354 IPR002885 -
Spst9g01642 768 Pfam PPR repeat family 130 179 IPR002885 -
Spst9g01642 768 Pfam PPR repeat family 207 249 IPR002885 -
Spst9g01642 768 Pfam PPR repeat family 493 541 IPR002885 -
Spst9g01642 768 Gene3D Tetratricopeptide repeat domain 51 195 IPR011990 GO:0005515
Spst9g01642 768 Gene3D Tetratricopeptide repeat domain 370 440 IPR011990 GO:0005515
Spst9g01642 768 Gene3D Tetratricopeptide repeat domain 196 266 IPR011990 GO:0005515
Spst9g01642 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Spst9g01642 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Spst9g01642 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Spst9g01642 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Spst9g01642 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Spst9g01642 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 668 702 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01642 289 699 Glycosyltransferase AT1G05670 23.786 8.01e-35 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01642 - - lang:109340115 967.222