Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01624 ATGCTCCACAACAAGTCCTTCGTCAAGAAAACCAGAGCGGGCAAAGTCATGAAGCAAGTGCGGGAGCACTACCTGCGTGACGACATATACTGCGGGGCACCGTTTTGCACCGTTTGCGATACTTCGGGTGCTCGCCTCAGCGCTTCCCCTTCCACCATTCTCATTGTGGACACCAATGTCGTGCTCAACCAGATTGATTTGCTGGAGAATCAGGCATTCGATAACATTGTGGTGTTGTCCATTGTGTTGGAAGAGGTTAAGAACAAGAATATGGCTGTTTACAACCGTATAAGAGCTCTCTGTAGCAATTCCACGAGGAAGTTCTTTGTATTTTCCAATGAGTACCACAGAGATACATATATTAAGGAAATGAGTGGGGAAACTAAAAATGATAGGAATGATAGAGCTATTCGAGTGGCTACTCAGTGGTATCAGAAGCATCTTGGTGGAACAGTAAAGGTTTTGCTTATAACTAATGATAAAGAAAACAAAAGAAAGGCTAGTGAAGAGGGCATATTTGCTGAAACAGTTGAGTCATATGTCAAGTCTTTGGACCAACCTGATTTACTTGACCTGCTTGTGCGACCTGCATCAGAAGATGTGGAAATGGAAGAGGTTGAAGATCTTAGACCATCCAAGAGGAAAGTCATCTACTTGGAGCATAAACCAATGTCAGAAATTACTTCTGGTTTGCATCGTGGAATATATCATCAAGGGAAACTTCGTGTAAACCGTTATAATCCATTTGAAGCATATGTTGGGAGGGAGAGCATTGGTGATGAAATAGTTATTTATGGGCGCTCAAACATGAATCGAGCTTTCGATGGGGATATTGTGGCAGCTGAACTTCTGCCACAGGACCAGTGGCAAGAAGTCTCATCTCTATCTATAGCTGGTGAAGAAGATGAGGATAAGGATGAAGATGTTCATCTAGCTCCAAATAGTGCTGATGTTGCACCTAGAACTATTCCTCAGCAGGGTTCTTCTGGACAAGTAAATGCGGTATCCAGTCGTCCTTCTGGTCGTATTGTTGGTATTATAAAGAGAAACTGGCATTCGTATTGTGGATCTCTGGACCCAATGCCTATGCCTGCAGGAAGTGGTGGAATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAATTCCCAAGATTCGAATCCAAACACGACAACTTGAGAACCTTTTGGATAAGAGGATTATTGTTGCAGTTGATTCTTGGGATCGTCAGTCACGATATCCATCTGGCCATTATGTGCGAACTATAGGGGAGATAGGTGATAGAGATACTGAAAGTGAGGTGGTTTTGATAGAAAATGACATAAATACGCGGCCATTCTCTTCACAAGTGCTAGCATGCTTGCCTCCATTGCCATGGTTAGTTTCTTCTGAAGATTTGTCTAATCCAATCAGGCAGGACTTGCGTCATCTGCTTGTCTTTAGTGTGGACCCTCCAGGCTGTAAGGATATTGATGATGCACTCCACTGTCACGCTCTTCCAAATGGAAACTTTGAAGTTGGAGTTCGTATCCTTCGTTTGAATATTGCTGATGTGACAAATTTTGTTCATCCTGGCACTCCCCTTGATGATGAGGCTTCACAGAGGGGTACATCTGTCTACCTTGTGGAGCGGCGAATAGACATGCTTCCCAAACCCCTTACAGAAGACATATGTTCCCTTCGTTCTGACGTGGAAAGGCTCGCATTCTCTGTCATATGGGAAATGACAGCTGAAGCAGACGTCATTTCCACCAGATATACAAAAAGTGTCATAAAATCTTCTGCAGCATTGTCATATGTTGAAGCACAAGCCAGGATGGATGATAGTCGATTGATGGATTCGATTACTGTGGATTTGAGGAATATGAATAGTTTAGCAAAGAAAATGAGGTTGAGGCGCATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAAGTCAAATTTCAAATTGACACAGAGACTCATGACCCTCTTGATATCGGAATGTACCAGATCCGGGAGGCCAACCAATTGGTGGAGGAGTTTATGCTTGCTGCTAACGTTTCTGTTGCACAACAAATTCTTAAAAGTTTTCCATTCTGCTCATTATTAAGGCGGCATCCAACACCAACCAGAGAGATGCTTGAACCCTTATTACAGACTGCTGCTGCAGTTGGCTTGCACTTGGATGTTTCGTCATCAAAAGCATTGGCTGATTCTCTTGACCATGCTGTGGGCGATGATCCTTACTTCAATAAGTTAATCCGTATATTGGCAACTAGGTGCATGAGTCAGGCAGTTTATTTCTGCAGTGCGGATCTTAGCCCTCCAGAATATCATCATTATGGGCTTGCAGCTCCTTTGTATACCCATTTCACATCACCTATAAGAAGATATGCAGATGTCATTGTGCACAGGTTACTTGCTGCTTCTTTAGGAATATCAAAGTTACCGTCTGTATTTCAAGACAGACTCCAGCTCACTAATATTGCAGACAATTTAAATTACCGGCACAGGAATGCCCAGTATGCAGGGCGAGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAAGAGGCCTACAGACACGGAGGCTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTCGTTCCCAAATATGGCATAGAAGGACCTATATATTTGACAAAAGCCGAAAAGGGAAGTGAAAAGAGAAGTGGAGAATGGTATGTAGATGAGCAACAGCAGAAGATAAAAAAGATGGATGGTAGCCTTTCATACAGCGTTTTGCAGACAGTCCAAATTCACATGGAGGTTGTGGAGCCTCAGCCTAACCGGCCAAAACTTCAGCTTACTCTCATCTAG 2832 0.4315 MLHNKSFVKKTRAGKVMKQVREHYLRDDIYCGAPFCTVCDTSGARLSASPSTILIVDTNVVLNQIDLLENQAFDNIVVLSIVLEEVKNKNMAVYNRIRALCSNSTRKFFVFSNEYHRDTYIKEMSGETKNDRNDRAIRVATQWYQKHLGGTVKVLLITNDKENKRKASEEGIFAETVESYVKSLDQPDLLDLLVRPASEDVEMEEVEDLRPSKRKVIYLEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGRESIGDEIVIYGRSNMNRAFDGDIVAAELLPQDQWQEVSSLSIAGEEDEDKDEDVHLAPNSADVAPRTIPQQGSSGQVNAVSSRPSGRIVGIIKRNWHSYCGSLDPMPMPAGSGGIAHALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVRTIGEIGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWLVSSEDLSNPIRQDLRHLLVFSVDPPGCKDIDDALHCHALPNGNFEVGVRILRLNIADVTNFVHPGTPLDDEASQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTAEADVISTRYTKSVIKSSAALSYVEAQARMDDSRLMDSITVDLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQLVEEFMLAANVSVAQQILKSFPFCSLLRRHPTPTREMLEPLLQTAAAVGLHLDVSSSKALADSLDHAVGDDPYFNKLIRILATRCMSQAVYFCSADLSPPEYHHYGLAAPLYTHFTSPIRRYADVIVHRLLAASLGISKLPSVFQDRLQLTNIADNLNYRHRNAQYAGRASVELHTLIYFRKRPTDTEARIVKIRSNGFFVFVPKYGIEGPIYLTKAEKGSEKRSGEWYVDEQQQKIKKMDGSLSYSVLQTVQIHMEVVEPQPNRPKLQLTLI 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01624 943 SUPERFAMILY Nucleic acid-binding proteins 856 939 IPR012340 -
Spst9g01624 943 SUPERFAMILY Nucleic acid-binding proteins 429 852 IPR012340 -
Spst9g01624 943 FunFam Exosome complex exonuclease RRP44 homolog A 856 943 - -
Spst9g01624 943 Pfam PIN domain 55 177 IPR002716 -
Spst9g01624 943 FunFam Exosome complex exonuclease RRP44 9 192 - -
Spst9g01624 943 ProSitePatterns Ribonuclease II family signature. 774 798 IPR022966 -
Spst9g01624 943 Gene3D - 351 426 - -
Spst9g01624 943 FunFam Exosome complex exonuclease RRP44 homolog A 351 426 - -
Spst9g01624 943 Pfam Rrp44-like cold shock domain 223 304 IPR033771 -
Spst9g01624 943 Pfam S1 domain 857 930 IPR033770 -
Spst9g01624 943 Pfam RNB domain 471 805 IPR001900 GO:0003723|GO:0004540
Spst9g01624 943 SMART RNB_2 471 807 IPR001900 GO:0003723|GO:0004540
Spst9g01624 943 SUPERFAMILY PIN domain-like 52 186 IPR029060 -
Spst9g01624 943 Pfam Dis3-like cold-shock domain 2 (CSD2) 373 440 IPR041505 -
Spst9g01624 943 PANTHER RIBONUCLEASE 21 942 - -
Spst9g01624 943 Gene3D - 9 192 - -
Spst9g01624 943 SMART PIN_9 52 165 IPR002716 -
Spst9g01624 943 Gene3D - 207 312 - -
Spst9g01624 943 CDD PIN_Rrp44-like 9 180 - -
Spst9g01624 943 FunFam Exosome complex exonuclease RRP44 homolog A 205 313 - -
Spst9g01624 943 Gene3D - 856 943 IPR012340 -
Spst9g01624 943 SUPERFAMILY Nucleic acid-binding proteins 215 423 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01624 Spst-Chr9 16469185 16484562 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01624 K12585 - gmx:100806652 1751.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01624 9 16469185 16484562 Spst9g01624 9 16469185 16484562 ECH