Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01555 ATGGATAATTCCACCCAGGAATCCCACCTTCGATCGGAGAACTCGGTCACCTACGAATCACCGTATCCAATCTACGCCATGGCCTTCTCCCCCTCCCACCCCCACCGTCTCGCCCTCGGAAGCTTCATCGAAGATTACACCAACCGCGTTCACATCCTCTCCTTCCACCCCGACACCCTCTCCCTCAACCCCCACCCCTCCCTCTCCTTCGACCACCCTTACCCTCCAACCAAGCTCATGTTCCACCCTCGCAAACCCTCCCCCTCCTCCTCCTCCGACCTTCTCGCCACCTCCGGCGACTACCTCCGCCTCTGGGACGTCCGCGAAAACTCCGTTGAGCCTCTCTCCCTCTTCAACAACAGCAAGACCAGCGAGTTCTGCGCCCCCCTCACCTCCTTCGACTGGAACGACATCGAGCCCAACCGCATCGGCACCTCCAGCATCGACACCACCTGCACCATCTGGGACATCGAACGCACCGTCGTCGAGACGCAGCTTATCGCCCACGACAAGGAGGTCTACGACATCGCCTGGGGCGAGGCCAGAGTCTTCGCCTCCGTCTCCGCCGATGGCTCCGTCCGAATCTTCGATTTGCGCGACAAAGAGCACTCCACCATCATCTACGAGAGCCCCCACCCCGACACCCCTTTGCTTCGTTTGGCTTGGAACAAGCAGGACCTGAGGTACATGGCTACCATCTTGATGGATAGTAATAAAGTTGTGATCTTGGATATTAGGTCCCCCACTACCCCTGTGGCGGAGTTAGAGAGGCATCGTGGGAGTGTGAATGCCATTGCTTGGGCCCCTCATAGCTCCACGCATATTTGTTCTGCCGGGGATGATACTCAGGCTCTTATCTGGGAATTGCCCACGCTTGCTTCTCCCACTGGGATTGATCCCATGTGCATGTATTCTGCTGGCTGTGAAATCAACCAGCTGCAGTGGTCCGCGGCTCAGCCTGATTGGATTGCTGTTGCTTTCGCCAACAAGATGCAGCTTTTGAAGGTTTAA 1011 0.5727 MDNSTQESHLRSENSVTYESPYPIYAMAFSPSHPHRLALGSFIEDYTNRVHILSFHPDTLSLNPHPSLSFDHPYPPTKLMFHPRKPSPSSSSDLLATSGDYLRLWDVRENSVEPLSLFNNSKTSEFCAPLTSFDWNDIEPNRIGTSSIDTTCTIWDIERTVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPHPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTTPVAELERHRGSVNAIAWAPHSSTHICSAGDDTQALIWELPTLASPTGIDPMCMYSAGCEINQLQWSAAQPDWIAVAFANKMQLLKV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01555 336 Gene3D - 128 334 IPR015943 GO:0005515
Spst9g01555 336 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 289 IPR001680 GO:0005515
Spst9g01555 336 SMART WD40_4 159 197 IPR001680 GO:0005515
Spst9g01555 336 SMART WD40_4 63 106 IPR001680 GO:0005515
Spst9g01555 336 SMART WD40_4 248 288 IPR001680 GO:0005515
Spst9g01555 336 SMART WD40_4 111 156 IPR001680 GO:0005515
Spst9g01555 336 PANTHER WD REPEAT CONTAINING PROTEIN 5 336 IPR045159 -
Spst9g01555 336 FunFam WD repeat-containing protein LWD1 11 335 - -
Spst9g01555 336 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 206 IPR001680 GO:0005515
Spst9g01555 336 SUPERFAMILY WD40 repeat-like 21 296 IPR036322 GO:0005515
Spst9g01555 336 ProSitePatterns Trp-Asp (WD) repeats signature. 275 289 IPR019775 -
Spst9g01555 336 Gene3D - 2 127 IPR015943 GO:0005515
Spst9g01555 336 Pfam WD domain, G-beta repeat 166 197 IPR001680 GO:0005515
Spst9g01555 336 Pfam WD domain, G-beta repeat 251 287 IPR001680 GO:0005515
Spst9g01555 336 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01555 Spst-Chr9 15785809 15786819 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01555 K11805 - gmx:100804923 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01555 9 15785809 15786819 Spst9g01555 9 15785809 15786819 ECH