Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01486 ATGGAACGTTCTAGATCTAAGAGAAACTACTACTATGACCAAGACTATGATTCTGAGACTGTGGTCAGGACCAGGCCGCGATATAACAACCACTACAGCGCTGGCGCCGGCAACCACCGCCACCGTGGCGGCGGCGCCCGCCACGCGAAGGCGCAGGAGTCGCAGCTCAGCGTCACAACCAGCTACCGCATTCTGTGCCACGATATGAAGGCAGGCGGTGTGATAGGAAAGTCCGGCAGCATTATAAAGTCCATAAGGCAGCACACCGGGGCGTGGATCAACGTGCACGAGCTCATGGCGGGGGATGAGGAGCGGATCATCGAGATTTCAGACACGCGCCGGCGAGACCCCGAGGGGAGAATGCCGTCGTTTTCGCCCGCGCAGGAGGCGCTGCTACTGATCCACGAGCGGATTCTGGAGAGCGACGCGGGGTTTGGGGTGGCGGAGGAGGAGGAGGAGTATGGTGGGAGGGGAGGCGGCGTGAGGGACCGTGTGGCGACGAGGCTGGTGGTGTCGAGAATGCATGTAGGGTGTTTGTTGGGGAAAGGAGGAAAGATTATTGAACAAATGAGGATGGAAACCAAGACGCAGATTAGAATACTCCCTAGAGATCACAACCTTCCCCGTTGTGTTTCCATGTCTGAAGAGATTGTTCAGGTTGTAGGTGATTTAAATGCTGTAAAGAATGCTCTTGTTATCATATCATCACGGTTGAGGGAGAGCCAGCACCGTGACCGAAGTCATTTCCATGGACGTGTACATTCACCAGAGCGTTTTTTCTCTCCCGATGATGATTATATTCCTCACGTGACTAGTGGATCTCGTAGATCATCTGTGGATGGGGCCACTTTTGGATCACGAGGTTCCAACACAAATAGCAGAAACAATAGTCACTCCTCAATGAATTATGCACTGGAGCCTGGGGCTGCTCCTGTTGCCGATGATGCACAGGGCTTCTATGGGGAGGAACTTGTTTTCCGTGTACTCTGTCCAGTTGAGAGAGTTGATCGTATAATTGGGGAATCAGGTGGAATTGTAGAGTTCCTTCAGAATGAGGTTGGTGTAGATGTTAAGGTCACTGATCCTATCGGTGGTTCTGATGAACAGATAATTATCATTACTTCTGAGGAGGGTCCTGATGATGAGCTGTTCCCAGCTCAAGAAGCTTTGCTACATATACAATCTTGCATTGTCGACCTTATTCTAGATAAAGACAATACTATAACCACCAGGCTTGTTGTCCCATCTAGCGATATTGAATGCTTAGATGGAAAAGATGCTTCTCTTTCAGAAATAAGGAGATTGACAGGTGCTAATGTTCAAATTTTGCCAAGAGATGAGCTACCTCTCTGTGTTGCAAAAACCGATGAACTTGTACAGATTGTTGGAGAGATTAAAGCAGCCCGAGATGCTGTTGTGGAGGTGACATCAAGATTAAGAAGTTACTTGTACAGGGATTTCTTTCAAAGGGACACAGTATCACTACCAGCTCCCTTACCTGGTTTGGAGGCATCGTCCAATAATTTAGTTCCAGTTACTGAAACTCCCACAACCTATCAAAACTTGCAAACTGTTGCAGGAGCCCTTCCATCAAAGGAAACTGCAGGATCTAGCACTGAGGCAGGAAAGCAGAAAGAAAGTGATCGCCGCGATGAGGTGCTTAGTGGTTTAAATAGGATTGCTGTACCTCTCGTCACAAGGAGTACACTTGATGTTGTTATACCAGAGATTGCAGTACCAAAGCTTATGGCAAAATCCAAAAGCATGCTTGCCCAGATAAGTGAGTTGTCAGGAGCCAATGTAACCCTTGTAGAGGATAGACCAGACGTGACAGGGAAGACTATTCAGATATCTGGAACTCCAGATCAGGCAGAGAGAGCCCAGAGCTTGCTCCAAGGATTTATTTTGAGCACACAAGAAGATGGCCCTTAA 1932 0.486 MERSRSKRNYYYDQDYDSETVVRTRPRYNNHYSAGAGNHRHRGGGARHAKAQESQLSVTTSYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELMAGDEERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAGFGVAEEEEEYGGRGGGVRDRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVVGDLNAVKNALVIISSRLRESQHRDRSHFHGRVHSPERFFSPDDDYIPHVTSGSRRSSVDGATFGSRGSNTNSRNNSHSSMNYALEPGAAPVADDAQGFYGEELVFRVLCPVERVDRIIGESGGIVEFLQNEVGVDVKVTDPIGGSDEQIIIITSEEGPDDELFPAQEALLHIQSCIVDLILDKDNTITTRLVVPSSDIECLDGKDASLSEIRRLTGANVQILPRDELPLCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDTVSLPAPLPGLEASSNNLVPVTETPTTYQNLQTVAGALPSKETAGSSTEAGKQKESDRRDEVLSGLNRIAVPLVTRSTLDVVIPEIAVPKLMAKSKSMLAQISELSGANVTLVEDRPDVTGKTIQISGTPDQAERAQSLLQGFILSTQEDGP 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01486 643 Gene3D - 322 483 - -
Spst9g01486 643 SMART kh_6 163 239 IPR004087 GO:0003676
Spst9g01486 643 SMART kh_6 58 139 IPR004087 GO:0003676
Spst9g01486 643 SMART kh_6 566 636 IPR004087 GO:0003676
Spst9g01486 643 SMART kh_6 322 395 IPR004087 GO:0003676
Spst9g01486 643 SMART kh_6 406 480 IPR004087 GO:0003676
Spst9g01486 643 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 400 487 IPR036612 GO:0003723
Spst9g01486 643 ProSiteProfiles Type-1 KH domain profile. 59 131 - -
Spst9g01486 643 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 317 379 IPR036612 GO:0003723
Spst9g01486 643 ProSiteProfiles Type-1 KH domain profile. 567 631 - -
Spst9g01486 643 MobiDBLite consensus disorder prediction 528 550 - -
Spst9g01486 643 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 568 639 IPR036612 GO:0003723
Spst9g01486 643 Gene3D K Homology domain, type 1 161 243 IPR036612 GO:0003723
Spst9g01486 643 ProSiteProfiles Type-1 KH domain profile. 323 390 - -
Spst9g01486 643 MobiDBLite consensus disorder prediction 264 302 - -
Spst9g01486 643 Gene3D K Homology domain, type 1 566 638 IPR036612 GO:0003723
Spst9g01486 643 ProSiteProfiles Type-1 KH domain profile. 164 234 - -
Spst9g01486 643 CDD KH-I_PEPPER_rpt2_like 167 239 - -
Spst9g01486 643 CDD KH-I_PEPPER_rpt1_like 59 132 - -
Spst9g01486 643 CDD KH-I_PEPPER_rpt2_like 409 480 - -
Spst9g01486 643 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 54 110 IPR036612 GO:0003723
Spst9g01486 643 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 162 245 IPR036612 GO:0003723
Spst9g01486 643 Gene3D K Homology domain, type 1 58 141 IPR036612 GO:0003723
Spst9g01486 643 MobiDBLite consensus disorder prediction 271 302 - -
Spst9g01486 643 Pfam KH domain 62 110 IPR004088 GO:0003723
Spst9g01486 643 Pfam KH domain 167 235 IPR004088 GO:0003723
Spst9g01486 643 Pfam KH domain 571 632 IPR004088 GO:0003723
Spst9g01486 643 Pfam KH domain 326 378 IPR004088 GO:0003723
Spst9g01486 643 CDD KH-I_PEPPER_rpt1_like 323 391 - -
Spst9g01486 643 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 53 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01486 Spst-Chr9 14967939 14973413 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01486 K21444 - gmx:100804167 1110.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01486 9 14967939 14973413 Spst9g01486 9 14967939 14973413 ECH