Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01485 ATGAAAGGTTCATGTCTTCTTCCTTCGCACTCTTTCACCGGAATCAGGACAAGCAAAGAGTTTCCGCATATTCTGTCATTGTGTTACTTGAAAAGCATAACAGGCTTCTCAGTTTGTAATCAAAGGCAAAAATACAATGAAAAGCTTTACATTATTCCCATTCGGACTGCTTGTGTTCGGGTCTGCTTCTCAAGATCTTCAGTTGGGTCATTGGAATGTGGTGGGACAGGCCCACATAGTGATTCTTATTCAGGAATTTCAGCTCCAAATGACCTTCAGAGCATTGGAAGTTTAGAAAGAGAGTTGGAAGAATTATTTGATGAAGTGAAAAGAATGATTAGGATGGGAAACAAAAATGATGCTAAAGACCTGCTAACTGCAAATTATGAAGCTGTGAAAGAGAGCATGAATGCGGGTACTAAAGGCATAGAAGAAGCTGCAATTTTGGACGTCATAGCACTAGGTTACATGGCTGTTGGAGACTTAAAATTTGTTGGATCTCTGTTGGATATGATGAAAGAAGTTGTTGACAATTTGAAGGATGATGCACCTCGTCTGGATTCAATACTTATGCATATGGGAAGTATGTATGCAACATTGAACATGTTTGAAAAATCATTGGACACATATCAGAGGGCTGTCTACATTATGGAGAGGACCTACGGTAAGGATAGTACTTTACTTGTCACACCCTGTTTGGGTATGGCAAAAGTTCTTGGCTCTTTTGGAAAAGCAACAAAAGCAGTAGAGATATATCAGCGTGTGGTCACTCTTTTGGAATCAAGTAGAGGTTCCCAAAGTAAGGATTTGGTTGTACCTTTACTTAGTCTGGGCAATCTTTTACTCAAAGAAGGGAGACCCAATGACGCTGAAACTCATTTTACTAGAGTTCTCGACATACACACAAAATTATATGGACAAAATGATGGAAGAATTGGAATGGCAATGAGTTCCCTAGCCCGAGTTAAGAGTGCTCAAGGGAAATCAGATGAAGCAATCCAATTGTTTAGACGTGCTATTCAGGTCATGAAGGATTCAAATTACTTGTCACCAGATGACAGTATAATGGAAAAGATGAGAGTGGATCTAGCTGAATTGCTTCATGTCGCTGGGAGAGGGCAAGAAGGCAGAGAGCTATTAGAAGAGTGTCTGTGGATAACTGAGAGGCACAGAGGAAAGGAGCACCCCAGCCTGGTGACACACATGATAAACCTTGCAACTTCATATTCACGGTCAAAGAATTATGCAGATGCCGAACACCTGTTGAGAAGAAGTTTGCAAATCATGATAAAGCATAAGGGAACTGATGACCAGTCCATTAGCTTTCCTATGTTACACCTTGCAGTAACACTCTACCATTTAAAAAATGATGAAGAAGCAGAGAAACTTGCCCAGGAGGTTTTGCGCATCCGTGAGAAGGCCTTTGGAAAAAATTCCCTTCCTGTTGGGGAGGCTTTGGATTGTTTGGTGTCTATTCAAACCAGACTTGGTAAGGATGACAGAGAGTTACTCGAGCTGCTTAGAAGGATCCTGAATATCCAAGAGAGAGAATTTGGATATGAAAGTGAGGAGGTTTTGGTTACCCTAAAAAAAATTGTATACTACTTGGATAAACTAGGGAAAAAAGATGAAAAGCTGACCCTTCATAGAAGATTGTCTGTGCTTAGGAAGAAGTATAACCAAATGGTTAATTATTAA 1698 0.4022 MKGSCLLPSHSFTGIRTSKEFPHILSLCYLKSITGFSVCNQRQKYNEKLYIIPIRTACVRVCFSRSSVGSLECGGTGPHSDSYSGISAPNDLQSIGSLERELEELFDEVKRMIRMGNKNDAKDLLTANYEAVKESMNAGTKGIEEAAILDVIALGYMAVGDLKFVGSLLDMMKEVVDNLKDDAPRLDSILMHMGSMYATLNMFEKSLDTYQRAVYIMERTYGKDSTLLVTPCLGMAKVLGSFGKATKAVEIYQRVVTLLESSRGSQSKDLVVPLLSLGNLLLKEGRPNDAETHFTRVLDIHTKLYGQNDGRIGMAMSSLARVKSAQGKSDEAIQLFRRAIQVMKDSNYLSPDDSIMEKMRVDLAELLHVAGRGQEGRELLEECLWITERHRGKEHPSLVTHMINLATSYSRSKNYADAEHLLRRSLQIMIKHKGTDDQSISFPMLHLAVTLYHLKNDEEAEKLAQEVLRIREKAFGKNSLPVGEALDCLVSIQTRLGKDDRELLELLRRILNIQEREFGYESEEVLVTLKKIVYYLDKLGKKDEKLTLHRRLSVLRKKYNQMVNY 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01485 565 SMART tpr_5 229 262 IPR019734 GO:0005515
Spst9g01485 565 SMART tpr_5 187 220 IPR019734 GO:0005515
Spst9g01485 565 SMART tpr_5 441 474 IPR019734 GO:0005515
Spst9g01485 565 SMART tpr_5 271 304 IPR019734 GO:0005515
Spst9g01485 565 SMART tpr_5 399 432 IPR019734 GO:0005515
Spst9g01485 565 SMART tpr_5 313 346 IPR019734 GO:0005515
Spst9g01485 565 Coils Coil 95 115 - -
Spst9g01485 565 SUPERFAMILY TPR-like 176 258 IPR011990 GO:0005515
Spst9g01485 565 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 44 548 - -
Spst9g01485 565 ProSiteProfiles TPR repeat profile. 313 346 IPR019734 GO:0005515
Spst9g01485 565 SUPERFAMILY TPR-like 247 471 IPR011990 GO:0005515
Spst9g01485 565 Pfam MalT-like TPR region 188 469 IPR041617 -
Spst9g01485 565 Gene3D Tetratricopeptide repeat domain 97 357 IPR011990 GO:0005515
Spst9g01485 565 Gene3D Tetratricopeptide repeat domain 358 564 IPR011990 GO:0005515
Spst9g01485 565 ProSiteProfiles TPR repeat profile. 187 220 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01485 - - gmx:100805230 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01485 9 14939934 14944025 Spst9g01485 9 14939934 14944025 ECH