Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01465 ATGGGCTGCTTCTGTTCAACTTCACAGAAAAACAAAGCGTCAGGTTATGAGGAACCCACCGTTCTAGCAACTGAGACACCTTGTGAGTATCATGATCCATCATTGAATGTTACTGTTAATGAAGTAGAAGCCTTGCATGAACTCTACAAGAAGTTGAGCAATTCAATTGTCGAAGATGGTCTTATTCACAGGGAAGAATTCCAGCTGGCACTATTCAGGAATAAAAACAAGAGAAATCTGTTTGCAGATAGGATTTTCGACTTGTTTGATCTCAAGCGCAATGGGGTCATTGATTTTGGCGAATTTGTTCGATCATTGGGTGTCTTTCACCCAAATGCACCTTTAGAAGACAAAATTACTTTTGCTTTTAGGTTGTATGATCTGAGGCAGACGGGGTTTATTGAAAGAGAGGAGTTGAAGGAGATGGTATTGGCACTTCTCCACGAGTCGGATCTTGAGCTTTCAGATGATATGATTGAAAGCATTGTGGACAAGACATTTAGTGATGCTGACATAAACGGTGATGGAAAGATCGATCAAGATGAGTGGAAAGCATTTGTGTCCAAACATCCATCCTTGATAAAGAATATGACTCTTCCATATCTGAAGGATATTACATTGGCATTTCCCAGTTTTATTGTAAATACAGAAACTGAAGACTCAGAGATGTGA 672 0.3958 MGCFCSTSQKNKASGYEEPTVLATETPCEYHDPSLNVTVNEVEALHELYKKLSNSIVEDGLIHREEFQLALFRNKNKRNLFADRIFDLFDLKRNGVIDFGEFVRSLGVFHPNAPLEDKITFAFRLYDLRQTGFIEREELKEMVLALLHESDLELSDDMIESIVDKTFSDADINGDGKIDQDEWKAFVSKHPSLIKNMTLPYLKDITLAFPSFIVNTETEDSEM 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01465 223 ProSiteProfiles EF-hand calcium-binding domain profile. 158 193 IPR002048 GO:0005509
Spst9g01465 223 ProSitePatterns EF-hand calcium-binding domain. 171 183 IPR018247 -
Spst9g01465 223 ProSiteProfiles EF-hand calcium-binding domain profile. 77 112 IPR002048 GO:0005509
Spst9g01465 223 PANTHER CALCINEURIN B 1 221 IPR045198 GO:0005509|GO:0019722|GO:0019900
Spst9g01465 223 Gene3D - 33 221 - -
Spst9g01465 223 PRINTS Recoverin family signature 85 106 - -
Spst9g01465 223 PRINTS Recoverin family signature 178 198 - -
Spst9g01465 223 PRINTS Recoverin family signature 132 150 - -
Spst9g01465 223 Pfam EF-hand domain pair 58 104 IPR002048 GO:0005509
Spst9g01465 223 Pfam EF-hand domain pair 117 186 IPR002048 GO:0005509
Spst9g01465 223 FunFam calcineurin B-like protein 3 31 220 - -
Spst9g01465 223 SMART efh_1 118 146 IPR002048 GO:0005509
Spst9g01465 223 SMART efh_1 162 190 IPR002048 GO:0005509
Spst9g01465 223 SMART efh_1 81 109 IPR002048 GO:0005509
Spst9g01465 223 SUPERFAMILY EF-hand 35 212 IPR011992 -
Spst9g01465 223 CDD EFh 118 188 IPR002048 GO:0005509
Spst9g01465 223 ProSiteProfiles EF-hand calcium-binding domain profile. 114 149 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01465 Spst-Chr9 14778371 14780499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01465 37 223 EF-hand Containing Proteins AT5G24270 75.401 1.08e-102 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01465 K06268 - gmx:100811649 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01465 9 14778371 14780499 Spst9g01465 9 14778371 14780499 ECH