Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01376 ATGTACCCATTTTTTAAGCAGACGCAAGGTCCTCACTTTTCTCTTTCTTATTGCTCTCTTCTCCTAAACCATTGTTTATCTCAAAAATCCCTTGACTTTGTTAAAATCGTGCATGCCCATTTCTTCAAACTGGGTCTTAACACCTACACCTATTTGGGTAATCACTGTCTCAACCTTTACTCAGAGCTCGGTCACGCTGATGATGCACTGAATGTGTTTGACGATATTTCACACAAGAACACCATATCCTGGAACATTTACTTAAAAAGGTTGCTAAAAAGTGGCCAGCTTGGCAAGGCTTGTCACGTGTTTGATGCAATGCCTGTTAAAGATGTCGTTACTTGGAACTCCATGGTTTCGGGTTATGCTTCTTGTGGGTTTCTAAGTCATGCATTGGAGCTTTTTGTTGAAATGCAAGGCACTGGTGTGAGACCAAGTGGGTTCACTTTCTCCATTGTGATGTCACTCGTGTCAAGTCCCTTTCATGCTAAGCAGATTCATTGTAGGATGATCAGAATTGGGATGGATTTGGAAAATGTAGTTCTTGGGAATTCGTTAATAACTATGTATGGGAAGGTTGGTCTTGTTGAGTATGCTTTTGGTGCGATCATGACTATGAAGCAGTTTGATGTTATATCTTGGAACTCTTTGATCTGGGCCGGTCAAAGAGCTGGACACAGTGAGCTGGCTTTGGAGCTGTTCTATAAGATGAGAGATGCTGAGTTGTTACCCGATCAGTTTACGTGTTCAATGTTGATGAGTGTCTGTTCTAACTTGCGAGACTTGGACAAGGGTAAGCAGGTTTTTGCCTTTTGTTTCAAGATGGGATTTATTTATAATAGCATTGTATCCAGTGCTACTATTGACTTCTTTTCCAAATGCAACAGATTGGAGGATTCTGTTCAGCTCTTTAAGGAACAAGATCAATGGGATTCAGCTTTATGCAATTCCATGATTTCAGGCTATGCTAGACATGATTTAGGGGAAGATGCTCTTCGACTCTTTATGTTGACCTTGAGGAAGAATATCAGGCCAACAGAGTACATGGTTAGCTCTCTCTTGAGTTCTGTTTCGATTTTCTTACCAGTTGAAGTGGGAAATCAAATCCATTCTTTGGTTCCTAAACTGGGTTTTGAGTCAGATGCAGTTATTGCTAATTCACTTGTTGACATGTATGCTAAATTTGGGTTTATTGATGATGCGTTGAATATCTTCAAAGAAATGAAAATAAAAGATTTGGTATCATGGAACACTATGATGATGGGACTGACTTACAATGGCAGATTGTCTTCTACCATGAACCTCTTCAGGGAATTATTGACTGGAGGAGGCATGCTTCCAGATCGAATAACACTTACTGCAGTTCTACTAGCATGCAACTATGGATTATTGGTTGATGAAGGAGTTGAAATATTTTCCTCAATGGAGATTAAATTCGGAGTAAAACCAGGAGAAGAACATTATGAATGCGTTGTGGCGATGTTGAGTAAAGTTGGTAAGCTCAAAGAAGCCATTGATATCATAGAAACAATGCCGTATAGAGGTACCTCTGACATTTGGAGGTCAATTCTTTCTGCATGTGCAGTTTATGGAGACTTGCAAATTATAGAAGGTGTTGCAAAGAAAATAATTGATAGGGAAACACAAACATCCTTACCTTACTCGGTGTTGGCTCAAACATATCAAATGAGAAGTAGATGGGAGACCATGGTTCGAATGAGAAAGGCTGTGGAAACTAAAGGTACCAAAGAGTTCATTGGATGCAGTTGGATTGGAATAAAAAATACCGTGTACACTTTTGCGTCAAATCAATTACAACATTATGGTGGCAAGGATCTTTATCTGTTGTTGAATTTACTGGGCTGGGAAATGGAGACTGAAGGTTATGTCTAA 1893 0.3957 MYPFFKQTQGPHFSLSYCSLLLNHCLSQKSLDFVKIVHAHFFKLGLNTYTYLGNHCLNLYSELGHADDALNVFDDISHKNTISWNIYLKRLLKSGQLGKACHVFDAMPVKDVVTWNSMVSGYASCGFLSHALELFVEMQGTGVRPSGFTFSIVMSLVSSPFHAKQIHCRMIRIGMDLENVVLGNSLITMYGKVGLVEYAFGAIMTMKQFDVISWNSLIWAGQRAGHSELALELFYKMRDAELLPDQFTCSMLMSVCSNLRDLDKGKQVFAFCFKMGFIYNSIVSSATIDFFSKCNRLEDSVQLFKEQDQWDSALCNSMISGYARHDLGEDALRLFMLTLRKNIRPTEYMVSSLLSSVSIFLPVEVGNQIHSLVPKLGFESDAVIANSLVDMYAKFGFIDDALNIFKEMKIKDLVSWNTMMMGLTYNGRLSSTMNLFRELLTGGGMLPDRITLTAVLLACNYGLLVDEGVEIFSSMEIKFGVKPGEEHYECVVAMLSKVGKLKEAIDIIETMPYRGTSDIWRSILSACAVYGDLQIIEGVAKKIIDRETQTSLPYSVLAQTYQMRSRWETMVRMRKAVETKGTKEFIGCSWIGIKNTVYTFASNQLQHYGGKDLYLLLNLLGWEMETEGYV 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01376 630 FunFam Pentatricopeptide repeat-containing protein At3g49710 23 163 - -
Spst9g01376 630 Gene3D Tetratricopeptide repeat domain 6 124 IPR011990 GO:0005515
Spst9g01376 630 Gene3D Tetratricopeptide repeat domain 125 271 IPR011990 GO:0005515
Spst9g01376 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Spst9g01376 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Spst9g01376 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Spst9g01376 630 Gene3D Tetratricopeptide repeat domain 364 462 IPR011990 GO:0005515
Spst9g01376 630 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 92 630 IPR046960 GO:0003723|GO:0009451
Spst9g01376 630 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 383 609 - -
Spst9g01376 630 Pfam PPR repeat family 110 155 IPR002885 -
Spst9g01376 630 Pfam PPR repeat family 210 256 IPR002885 -
Spst9g01376 630 NCBIfam pentatricopeptide repeat 113 146 IPR002885 -
Spst9g01376 630 NCBIfam pentatricopeptide repeat 315 346 IPR002885 -
Spst9g01376 630 NCBIfam pentatricopeptide repeat 386 413 IPR002885 -
Spst9g01376 630 Gene3D Tetratricopeptide repeat domain 272 359 IPR011990 GO:0005515
Spst9g01376 630 Gene3D Tetratricopeptide repeat domain 463 603 IPR011990 GO:0005515
Spst9g01376 630 Pfam PPR repeat 488 515 IPR002885 -
Spst9g01376 630 Pfam PPR repeat 414 440 IPR002885 -
Spst9g01376 630 Pfam PPR repeat 385 411 IPR002885 -
Spst9g01376 630 Pfam PPR repeat 315 341 IPR002885 -
Spst9g01376 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01376 Spst-Chr9 13558493 13560385 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01376 100 630 Glycoside Hydrolase AT3G49170 30.869 1.80e-77 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01376 - - gmx:102663822 1070.07