Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01340 ATGGAGCTGCCGGAATGCCCGGTGTGTCTTCAATCCTTCGACGACCGCGACGCAATCCCTCGAGTCTTATCATGTGGACACTCCGTTTGCGAAGCTTGTCTTGCGGAGCTTCCGCAGCGGTACCCGAACACTATTCGGTGCCCCGCGTGCACCCAACTCGTGAAGTACCCTTCTCAACAAGGCCCTTCCGCTCTTCCCAAAAACATCGACCTCCTCAGACTCTCCCTCCAACACTCCTCTTCATCATCATCATCTAATCATTCCCACAAACCCAACCAACGGTCCACGATCAATTCTTGTTACGACCACTCACAGTTCTGGTCCCCTGAGTTCTACGCTGCATGGAAGGATTGGATTCTCCCGCACGACGCCGTTTTGACCGACGATCATTGTCTTGGTCGGTTCAGTTCGTCCAAGGGTAGGATTTGTTTCGGAGTTAACCGCTGCGTGAGTCTCGCTCCTGTTGTTTGTTTCTCTCCTGGGAATGACTCTAAGTTTAGGTTTAGTTATGTTGCATGGGTGATTAAGTGTTTGGAGGGGATGAGCCAGGTTGCGAGAGAGGAGTTAGGGTTGATTCTAGAAGCTTCCGTGAGGCAGGGGAGGGTGTGTAGGGTTTATGGGTTGTGGAGTGAAGGGGTGAAGGGACCTCTGTGTATGGTGTGTGAGAGGCAAAGCGGTAATCTTTTGGACACGTGTGGTGAATTGGGAAATGGGTTTGTTTGTCGGAATGAGGGTGGTTTGGAGTTGGACACCGGTGGGATTTTTAGGTTTGTAATGATTGCGAGGGGTATATGTGAAGCTGTCCTTTCTTTGCATTTGGAGGGTTTGGTTGCTGGCTGTTTGGGGCTTTCTTGTTTCTCTTTTGATGAGCTTGGTGCGATTTGTGTTGATTTGAATGAGGTATTGGCGATGGGAAGGAGGGTGAATGCTGGTTCCGGTAAACATGAAGAAGAAGCAATGTGTAAAAATTGTTTGGAAAGTGATATTTTCGTAAGCCCTGAGGTTTTGTATGAGTTGTTGCATAAGAGGGAATCTGCTCCAGATAGTGGGCACTTGAGATATCCAATTGGGTGTCGCTCAGATGCATGGTCATTGGCCTGTGTACTGCTGTGGCTTCTTATTGGAAATGTGCTGCCTCGGAATACCTTGGAAATGAATAAAGAGAACGGTGGTGATAACTCAGCTAGTTATGTGTGTTGGGTGGAGAAAGTTAGTTCTGTTTTGGAAGATAAACTAGGCTCTGATTATGCGTCACTGAGGACGACTCTCTGCAAATGTTTGGAGGTCAATCCAGGACACCGTCCAGATGTGATAGATGTAAGGAAGTGCGTTCAGGATATGTTAGTCAAACCTCAATTTGAGTTTCTGGGCAACTTGGAGGTTACAATAAGTAAAGACAGCACAGGTCGATGTTTGGTTCTAGGGGAGCTGTGTTTGTTGTCTAAGGAAAGGTCTAATGAACCAAGAGAACATGAGTTGCAGGAGAAAGAAATTGGCGATCAACCAAATTTTGCTCAAGATGGAAATGACAAGTCTGATGAAGACTTTGCTGCTGGCTTATCTAGGGGACTGACTGAACTCAAAGATCTCCGAGGCCATCTTGATTGTGTTAGTGGATTGGCTGTTGGGGGGGGTTATTTGTTTAGCTCCTCATTTGATAAAACTGTCCGTGTATGGTCCTTGCAGGACTTTTCTCATTTACACACATTTAGAGGACACGAGAATAAAGTCATGGCTCTAGTTTATGTAGATGCAGAAGAACCATTGTGCATAAGTGGCGACAGTGGAGGGGGCATATTTATTTGGGAAATCGCTGCCCCTTTTAGGCAAGATCCCTTGAGGAAATGGAGTGAGAAGAAGGATTGGCGCTTTAGTGGTATCCACTCCTTGGCTGTTTCCAAAAATCGTTCTCTTTACACTGGAAGTGGAGATAGAGCAATTAAAGCTTGGTCATTAAAGGATGAAACTTTGATATGCACAATGACTGGCCATAAATCTGTAGTTTCCACGCTAGCTGTTTGTGATGAGGTTCTTTACAGTGGTAGTTGGGATGGTACGGTTCGGTTGTGGAGTCTAAATGACCACAGTCCATTGACAGTTTTGGGGGAAGATACGCATGCAGAGATGAAGTCTATCCTGGCTGTTACTGTAGATAGGCATTTGCTTGTTGCAGCACATGAGAACGGATGCATAAAGGTCTGGAGGAACGACGTGTTCATGAATTCCAAAACGTTGCATAATGGGGCCATTTTTGCAATGAGCATGCAGGGAAAAAGTCTTTATACAGGAGGTTGGGACAAAAATGTTAATATACAGGAATTATCTGGAGACGAATTTGAACTGGACATCAAAGCATATGGATCCATTCCTTGCAGTTCCGTTGCAACAGCTATATTATGCAGCCAAGGAAAACTATACGTTGGATATGCTGATAAGTCTATTAAGAGATTCATATTCAGTCGTTCACTATCTTCACATCATTTGTGTCTCCTTCACTGGGAAGCCTCTCGGGCAGTGATAAACTCCACTGAAGAAAACCGCGGAATGAGAATCACTTCCACCGACGCCAATGCCAACGCTTTATTTATTCGCTCGCGTCCTTCCGTTGCTCCCTGGCCTCGCCTGCCACGACGTCGTTGCGCACCCGTTCTCGTCACCGTCGGCTCCGTTAAGGAAAATCTCGGTCGTGTTCAAAAGCGTTTCACCGACTTCACGAGCTTGAACTATTGGGTTGTTCGCGACTACTACCGTCTCGTGAACTCCGTCAACGCCTTCGAGCCTCAGATTAAGGCGCTCTCCGATGAACAACTGGCCGCGAAAACCGCCGAGTTTCGCCGCCGGCTCGCGCGAGGGGCCACCCTTGCCGACATTCAAGCTGAGGCGTTCGCTGTTGTTCGTGAAGCTGCATGGAGAAAGCTGGGAATGCGCCATTTCGATGTTCAGATTATTGGTGGGGCAGTGCTGCATGATGGTTCCATTGCTGAGATGAAAACCGGGGAGGGTAAAACCTTGGTTTCCACCCTAGCTGCTTATCTAAATGCCCTGACCTCTGAGGGTGTTCATGTGGTAACTGTTAATGATTACTTAGCTCAACGTGACGCTGAATGGATGGGACGAGTTCATCGTTTCTTAGGTCTCTCCGTCGGTCTTATTCGGGAACTTGGCTTTGATTACCTGCGAGATAATCTTGCTGGAAATCGTGAACAACTTGTAATGAGATGGCCAAAGCCCTTTCATTTTGGTATCGTTGATGAAGTGGATTCTGTCTTAATTGACGAGGGAAGAAATCCTTTGTTAATCAGTGGTGAGGCTAGTAAAGATGCAGCACGGTTCCCTGTTGCTGCAAAAGTAGCTGAACTGCTTATACAGGGCATTCATTACAAAGTGGAGCTTAAAGATAATTCTGTGGAGTTGACTGAGGAAGGAATTTCTCTTGCTGAAATGGCTCTAGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCCAGATTTGTGATGAATGCTATAAAAGCTAAAGAATTCTATCGTCGAGATGTGCAATACATTGTCAGAGATGGGAAGGCTTTGATTATCAATGAGCTTACAGGAAGAGTTGAAGAGAAAAGAAGATGGTCTGAGGGAATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTTGTGGCACAGATCACATACCAGTCATTATTCAAGCTCTATCCAAAGTTGTCAGGAATGACTGGAACTGCCAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTTCGGATGCCAGTCATTGAAGTGCCCACAAATCTTCCTAATATTAGAAAAGATTTACCAATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTCGACAAGGTCAGCCTGTCTTAGTTGGGACAACTAGTGTAGAAAACTCAGAACTTTTGTCTGGTCTTCTTAGGGAATGGAATATTCCTCATAATGTTCTCAATGCTAGACCCAAGGTTTGTGAAAGTATAGATTGTTGTTTTGCCAACCTCACTGGCTCCCTCCCCCGTCATTTAATTCAGTATGCTGCAAAAGAAGCTGAAGTTGTTGCACAGGCAGGACGGAAACATGCCATTACCCTCTCTACAAATATGGCAGGCAGGGGCACGGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGCTTACTTTCATTTTTGACACGAGAGGATCCTAATGTTGAACTTGCAGATGAAGCTATTTCACAAAAGGTGCTTCCAAAGATAAAGGTTGGATCATCTTCAATGGCCTTACTGGCTAAGACAACCTTAATGGCCAAATATGTATCCAAAAGTGAGGGTAAAAGTTGGACGTATCAGAAGGCTAAATCTTTTATCTTGGAGGCTATTGAAATGAATGTTTCATATAGTTTGGAAGAGCTGGAGAAGCTTGCTAATGAAGAATCTGAGATCTACCCTCTTGGTCCATGTGTAGCGCTTGCCTATCTGTCAGTTTTGAAGGATTGTGAAGAACACTGTTTACATGAAGGTTCTGAGGTTAAAAGGCTTGGGGGTCTTCATGTGATTGGTACATCTTTACACGAGTCCCGGAGAATAGATAACCAGCTGCGTGGCAGAGCAGGAAGACAGGGGGATCCAGGATCAACCCGATTTATGGTCAGAACCTTGAGTTTTAGAGATGAACTGTTGAATACTATTTGCTCTGTAGCTCTGTATTTTGAGGGGAGTGCGATGACTGGGTGTGTGGATGAGATGTTTCAAAAGTTCAATTTTGATACTGAATGGGCAGTGAGACTTATCTCAAAGATTACAAATGATGAGGATCTGCCAATTGAGGGTGATGCCATTGTGAAGCAGCTTTTGGCGCTGCAAATCAATGCAGAAAAGTTCTTCTTTGGTATAAGAAAGAACCTTGTTGAGTTTGATGAAGTATTGGAGGTGCAACGAAAGCATGTTTATGATCTAAGACAATTAATCTTAACAGGAGATGATGAAAGTTGTTCTCAACACATACTCCAGTACATGCAAGCAGTGGTTGACGAGATTGTCTTCAATAATATTAATCCATTGAAGGTGCATCCACGTAGCTGGGGTTTGAGTAAGCTCTTGAAAGAATTCGTTAGTGTTGGTGGAAAGCTGTTGCATGAATCTTTTGAAGGAATTAGTGATCAAACTTTGCTAAATTCACTTGGGCTACTGAATGATACGAGTTCAGTTGATATTGTAAACTTTTCCCTTCCAAATTTGCCAGCAGCACCAAATGCCTTCAGGGGAATACGCAGGAAGAGCTCTTCGTTAAGACGATGGCTTGCTATTTGCACGGATGATTTAATTGGGAATGGGAAGTATCAAACAACTTCTAATCTCCTGCGCAAGTATCTTGGAGATTTTCTAATTGCTTCATATTTAAATGTTGTTGAAGAGTCTGGTTATGATGAGAGACATGCAAAGGAAATTGAGAGAGCCGTTCTTTTGCAAACTCTCGATTGTTTCTGGAGAGATCATCTTGTAAACATGAACAGACTCAGCTCTGCGGTGAACATTAGGAGCTTTGGCCATAGAAATCCTCTTGAAGAGTATAAAATAGATGGTTGTAGGTTTTTCATCTCAATGCTCAGTGCCACTCGAAGGTTAACTGTAGAAGCACTGCTGCGGTCCCTTAATCTCCCAGCAGTGTTATCCTTCTTTTACTTTGTCAAAGTTACAAGGAATGTGCCTGGAGATGAGCTGGCACCTTATTTACACAGGCGAAGCTAG 5802 0.4447 MELPECPVCLQSFDDRDAIPRVLSCGHSVCEACLAELPQRYPNTIRCPACTQLVKYPSQQGPSALPKNIDLLRLSLQHSSSSSSSNHSHKPNQRSTINSCYDHSQFWSPEFYAAWKDWILPHDAVLTDDHCLGRFSSSKGRICFGVNRCVSLAPVVCFSPGNDSKFRFSYVAWVIKCLEGMSQVAREELGLILEASVRQGRVCRVYGLWSEGVKGPLCMVCERQSGNLLDTCGELGNGFVCRNEGGLELDTGGIFRFVMIARGICEAVLSLHLEGLVAGCLGLSCFSFDELGAICVDLNEVLAMGRRVNAGSGKHEEEAMCKNCLESDIFVSPEVLYELLHKRESAPDSGHLRYPIGCRSDAWSLACVLLWLLIGNVLPRNTLEMNKENGGDNSASYVCWVEKVSSVLEDKLGSDYASLRTTLCKCLEVNPGHRPDVIDVRKCVQDMLVKPQFEFLGNLEVTISKDSTGRCLVLGELCLLSKERSNEPREHELQEKEIGDQPNFAQDGNDKSDEDFAAGLSRGLTELKDLRGHLDCVSGLAVGGGYLFSSSFDKTVRVWSLQDFSHLHTFRGHENKVMALVYVDAEEPLCISGDSGGGIFIWEIAAPFRQDPLRKWSEKKDWRFSGIHSLAVSKNRSLYTGSGDRAIKAWSLKDETLICTMTGHKSVVSTLAVCDEVLYSGSWDGTVRLWSLNDHSPLTVLGEDTHAEMKSILAVTVDRHLLVAAHENGCIKVWRNDVFMNSKTLHNGAIFAMSMQGKSLYTGGWDKNVNIQELSGDEFELDIKAYGSIPCSSVATAILCSQGKLYVGYADKSIKRFIFSRSLSSHHLCLLHWEASRAVINSTEENRGMRITSTDANANALFIRSRPSVAPWPRLPRRRCAPVLVTVGSVKENLGRVQKRFTDFTSLNYWVVRDYYRLVNSVNAFEPQIKALSDEQLAAKTAEFRRRLARGATLADIQAEAFAVVREAAWRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIRELGFDYLRDNLAGNREQLVMRWPKPFHFGIVDEVDSVLIDEGRNPLLISGEASKDAARFPVAAKVAELLIQGIHYKVELKDNSVELTEEGISLAEMALETNDLWDENDPWARFVMNAIKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFRMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRQGQPVLVGTTSVENSELLSGLLREWNIPHNVLNARPKVCESIDCCFANLTGSLPRHLIQYAAKEAEVVAQAGRKHAITLSTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTREDPNVELADEAISQKVLPKIKVGSSSMALLAKTTLMAKYVSKSEGKSWTYQKAKSFILEAIEMNVSYSLEELEKLANEESEIYPLGPCVALAYLSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVRTLSFRDELLNTICSVALYFEGSAMTGCVDEMFQKFNFDTEWAVRLISKITNDEDLPIEGDAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHILQYMQAVVDEIVFNNINPLKVHPRSWGLSKLLKEFVSVGGKLLHESFEGISDQTLLNSLGLLNDTSSVDIVNFSLPNLPAAPNAFRGIRRKSSSLRRWLAICTDDLIGNGKYQTTSNLLRKYLGDFLIASYLNVVEESGYDERHAKEIERAVLLQTLDCFWRDHLVNMNRLSSAVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLRSLNLPAVLSFFYFVKVTRNVPGDELAPYLHRRS 1933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01340 1933 MobiDBLite consensus disorder prediction 489 511 - -
Spst9g01340 1933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1273 1569 IPR027417 -
Spst9g01340 1933 Gene3D - 1170 1272 IPR027417 -
Spst9g01340 1933 SUPERFAMILY Pre-protein crosslinking domain of SecA 1102 1223 IPR036670 GO:0016020|GO:0017038
Spst9g01340 1933 ProSiteProfiles Trp-Asp (WD) repeats profile. 661 700 IPR001680 GO:0005515
Spst9g01340 1933 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 983 1124 IPR014001 -
Spst9g01340 1933 Gene3D Transferase(Phosphotransferase) domain 1 187 450 - -
Spst9g01340 1933 Hamap Protein translocase subunit SecA [secA]. 889 1904 IPR000185 GO:0005524|GO:0006605|GO:0006886
Spst9g01340 1933 FunFam Protein translocase subunit SecA 1772 1901 - -
Spst9g01340 1933 PRINTS SecA protein signature 957 981 IPR000185 GO:0005524|GO:0006605|GO:0006886
Spst9g01340 1933 PRINTS SecA protein signature 1195 1217 IPR000185 GO:0005524|GO:0006605|GO:0006886
Spst9g01340 1933 PRINTS SecA protein signature 1269 1282 IPR000185 GO:0005524|GO:0006605|GO:0006886
Spst9g01340 1933 PRINTS SecA protein signature 1232 1249 IPR000185 GO:0005524|GO:0006605|GO:0006886
Spst9g01340 1933 PRINTS SecA protein signature 1011 1021 IPR000185 GO:0005524|GO:0006605|GO:0006886
Spst9g01340 1933 PRINTS SecA protein signature 995 1009 IPR000185 GO:0005524|GO:0006605|GO:0006886
Spst9g01340 1933 SMART SecA_PP_bind_2 1103 1214 IPR011130 GO:0016020|GO:0017038
Spst9g01340 1933 SMART WD40_4 694 735 IPR001680 GO:0005515
Spst9g01340 1933 SMART WD40_4 617 651 IPR001680 GO:0005515
Spst9g01340 1933 SMART WD40_4 523 560 IPR001680 GO:0005515
Spst9g01340 1933 SMART WD40_4 654 691 IPR001680 GO:0005515
Spst9g01340 1933 SMART WD40_4 563 603 IPR001680 GO:0005515
Spst9g01340 1933 SUPERFAMILY Helical scaffold and wing domains of SecA 1631 1902 IPR036266 -
Spst9g01340 1933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 903 1271 IPR027417 -
Spst9g01340 1933 CDD DEXDc_SecA 936 1270 - -
Spst9g01340 1933 SUPERFAMILY RING/U-box 5 60 - -
Spst9g01340 1933 SMART SecA_DEAD_2 901 1258 IPR011115 GO:0005524|GO:0016020|GO:0017038
Spst9g01340 1933 Pfam SecA preprotein cross-linking domain 1114 1214 IPR011130 GO:0016020|GO:0017038
Spst9g01340 1933 Gene3D - 886 1147 IPR027417 -
Spst9g01340 1933 Gene3D - 611 865 IPR015943 GO:0005515
Spst9g01340 1933 Pfam SecA Wing and Scaffold domain 1625 1900 IPR011116 GO:0016020|GO:0017038
Spst9g01340 1933 CDD RING-HC_TRIM32_C-VII 4 53 - -
Spst9g01340 1933 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Spst9g01340 1933 SMART ring_2 6 50 IPR001841 -
Spst9g01340 1933 Gene3D Helical scaffold and wing domains of SecA 1598 1902 - -
Spst9g01340 1933 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Spst9g01340 1933 FunFam Protein translocase subunit SecA 1630 1750 - -
Spst9g01340 1933 SUPERFAMILY Protein kinase-like (PK-like) 198 452 IPR011009 -
Spst9g01340 1933 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Spst9g01340 1933 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 569 IPR001680 GO:0005515
Spst9g01340 1933 Pfam WD domain, G-beta repeat 658 691 IPR001680 GO:0005515
Spst9g01340 1933 Pfam WD domain, G-beta repeat 527 560 IPR001680 GO:0005515
Spst9g01340 1933 Pfam SecA DEAD-like domain 911 1052 IPR011115 GO:0005524|GO:0016020|GO:0017038
Spst9g01340 1933 PRINTS G protein beta WD-40 repeat signature 547 561 IPR020472 -
Spst9g01340 1933 PRINTS G protein beta WD-40 repeat signature 638 652 IPR020472 -
Spst9g01340 1933 PRINTS G protein beta WD-40 repeat signature 678 692 IPR020472 -
Spst9g01340 1933 SMART serkin_6 126 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g01340 1933 SUPERFAMILY WD40 repeat-like 525 816 IPR036322 GO:0005515
Spst9g01340 1933 CDD SF2_C_secA 1276 1568 IPR044722 -
Spst9g01340 1933 Gene3D - 1273 1594 IPR027417 -
Spst9g01340 1933 Coils Coil 1475 1495 - -
Spst9g01340 1933 ProSiteProfiles Protein kinase domain profile. 133 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g01340 1933 Pfam RING-type zinc-finger 6 48 IPR027370 -
Spst9g01340 1933 ProSiteProfiles SecA family profile. 897 1627 IPR014018 -
Spst9g01340 1933 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 9 1901 IPR000185 GO:0005524|GO:0006605|GO:0006886
Spst9g01340 1933 NCBIfam preprotein translocase subunit SecA 922 1581 IPR000185 GO:0005524|GO:0006605|GO:0006886
Spst9g01340 1933 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 661 693 - -
Spst9g01340 1933 Gene3D - 520 610 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01340 Spst-Chr9 13015718 13038019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01340 522 788 Acyl Lipid Metabolism Gene Families AT3G18860 28.671 2.63e-14 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01340 K03070 - gmx:100793437 2810.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01340 9 13015718 13038019 Spst9g01340 9 13015718 13038019 ECH