Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01338 ATGCACAGCACAAGTGAGTCGATTCAGGAGGTTGGAGAAGCGAGGGAAAAAGTGAGCAAGGTTATGATGACGTGTCCCACACTGGCACTTGACACTGCTCTTAATCAAACTGGAGTTAGAGTTTCGCCTGATTTAGTTGAAAATATTCTCAAGAGATTTGAGAATGCGGGCATGTCAGCATTTCGGTTTTTTGAGTGGGCAGAGAAGCAGAGAGGTTACTCACACAGTATAAGGGCTTATCACTTGATGATTGAATCTTTGGCTAAGATTAGACAGTACCAGATCGCGTGGGACCTTGTTAATGCCATGAGGAAAAAGGGTATGCTAAATGTTGAGACTTTTTGCATCATGATGAGAAAGTATGCTAGGGCTAACAAGGTCGATGAGGCTGTTTACACCTTTAATGTGATGAATAAATACGACGTGGTTCCAAACCTTGCTGCATTTAATGGTTTGTTAAGTGCTTTGTGCAAGTCCAACAATGTAAGGAAGGCTCAGGAGATTTTTGATGCTATCATGGGTCGGTTTGTGCCGGATGCAAAAACTTACAGCATTTTGCTTGAGGGGTGGGGAAAGGCTCCCAATCTTCCCCGAGCAAGGGAGGTTTTTAGAGATATGGTTCGCGCTGGGTGTGATCCTGATGTTGTTACTTATGGTATAATGGTTGATGTTCTTTGCAAAGCGGGGAGGGTTGATGAAGCTGTTGAGGTTGTAAAGGAAATGGATGAGAGCAATTGCAGGCCAACATCTTTCATTTATAGTGTCCTGGTTCATGCATATGGAGTGGAGCACCGTGTTGAAGATGCTATTGATACATTCCTGGAGATGGAGAAGACGGGAATCAAGGCTGATGTTGCAGTTTATAATGCATTGATTGGTGCCTTTTGTAAAGTAAATAAGTTTACAAATGTGCATAGGGTCTTGCAGGAGATGAAGATCAATGGCGTTGCTCCTAATTCAACGACCTGCAATGTTATTATAAGCAGTATGATTGGTCAGGGACAGACTGATAGAGCTTTCAGAGTTTTCCGCCGGATGATCAAGCAGTGTGAACCTGATGCTGACACTTATACAATGATGATAAAAATGTTTTGTCAGAAAAATGATCTGCAGATGGCTCTGAGAATATGGAAGTATATGAAGTCAAAACAATTTGTTCCAAGCATGCACACTTTTTCTGCCCTTATCAAGGGACTGTGTGAAAAGGGTGATGCTGCAAAAGCTTGCGTTGTTCTGGAAGAGATGATAGAGAAGGGAATTCGACCATCACGTATTACATTTGGGAGGTTAAGACAGTTGCTTTTAAAGGAAGGGAGAGAGGATGTACTCAAATTTCTTAATGAGAAAATGAATCTTCTTGTCAAGGAGCCTTTATATGATTAA 1383 0.4187 MHSTSESIQEVGEAREKVSKVMMTCPTLALDTALNQTGVRVSPDLVENILKRFENAGMSAFRFFEWAEKQRGYSHSIRAYHLMIESLAKIRQYQIAWDLVNAMRKKGMLNVETFCIMMRKYARANKVDEAVYTFNVMNKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAIMGRFVPDAKTYSILLEGWGKAPNLPRAREVFRDMVRAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDESNCRPTSFIYSVLVHAYGVEHRVEDAIDTFLEMEKTGIKADVAVYNALIGAFCKVNKFTNVHRVLQEMKINGVAPNSTTCNVIISSMIGQGQTDRAFRVFRRMIKQCEPDADTYTMMIKMFCQKNDLQMALRIWKYMKSKQFVPSMHTFSALIKGLCEKGDAAKACVVLEEMIEKGIRPSRITFGRLRQLLLKEGREDVLKFLNEKMNLLVKEPLYD 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01338 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Spst9g01338 460 SUPERFAMILY TPR-like 75 369 IPR011990 GO:0005515
Spst9g01338 460 Gene3D Tetratricopeptide repeat domain 310 458 IPR011990 GO:0005515
Spst9g01338 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Spst9g01338 460 Gene3D Tetratricopeptide repeat domain 28 172 IPR011990 GO:0005515
Spst9g01338 460 Gene3D Tetratricopeptide repeat domain 244 309 IPR011990 GO:0005515
Spst9g01338 460 Gene3D Tetratricopeptide repeat domain 173 243 IPR011990 GO:0005515
Spst9g01338 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Spst9g01338 460 Pfam PPR repeat family 284 329 IPR002885 -
Spst9g01338 460 Pfam PPR repeat family 352 400 IPR002885 -
Spst9g01338 460 Pfam PPR repeat family 110 158 IPR002885 -
Spst9g01338 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 349 IPR002885 -
Spst9g01338 460 PANTHER OS03G0856100 PROTEIN 19 348 - -
Spst9g01338 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Spst9g01338 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Spst9g01338 460 Pfam PPR repeat 210 241 IPR002885 -
Spst9g01338 460 NCBIfam pentatricopeptide repeat 113 145 IPR002885 -
Spst9g01338 460 NCBIfam pentatricopeptide repeat 356 388 IPR002885 -
Spst9g01338 460 NCBIfam pentatricopeptide repeat 322 349 IPR002885 -
Spst9g01338 460 NCBIfam pentatricopeptide repeat 182 215 IPR002885 -
Spst9g01338 460 NCBIfam pentatricopeptide repeat 216 249 IPR002885 -
Spst9g01338 460 NCBIfam pentatricopeptide repeat 252 285 IPR002885 -
Spst9g01338 460 NCBIfam pentatricopeptide repeat 390 423 IPR002885 -
Spst9g01338 460 NCBIfam pentatricopeptide repeat 287 319 IPR002885 -
Spst9g01338 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Spst9g01338 460 Pfam PPR repeat 252 281 IPR002885 -
Spst9g01338 460 Pfam PPR repeat 79 107 IPR002885 -
Spst9g01338 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01338 Spst-Chr9 13008682 13010064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01338 28 441 Glycosyltransferase AT1G05670 23.095 2.50e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01338 - - gmx:100790096 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01338 9 13008682 13010064 Spst9g01338 9 13008682 13010064 ECH