Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01305 ATGCCATTTTGGTCTCCACAGAGGTCGAAACTGTCTACCAAAATCCTCAACATAACCATATCCTCGCTGTGCAAAGCGAAGCAAATAGCCAAAGCCGAATCCGTAATAATCGACGGAATAAGAATCGGCGTTCTCCCCGACGTGGTCACATACAATACCCTGATCAACGCCTACTGTCGTTTCGTCTCCATCGACGTGGCTTACTCCGTCCTTGAGCGAATGCGCGAAGCAGGGATCCCCCCGGACGTCGTTTCGTACAACTCGTTAATCTCCGGCGCCGTCAGAAAGTGTTTGCTCTCCAAAGCCCTTGACCTGTTCGAGGAAATGCTGGCGAGAGGCGTAACCCCCGACGCGTGGAGCCACAACATCCTAATGCAAAGTTTGTTCAAGCTCGGAAAGCCCGACGAGGCCAATCGCGTTTTCAAAGAAACCGTTCTCCGCGGCGAGGTTCAAGCCACCACTTACAACGTCATGATTAACGGTCTCTGCAAGAACGGTTACGTCTCCAACGCCTTGAGCCTATTCAGGAACTTGCAGAGGCACGGTTTCGTGCCTCAGGTTTTGACCTACAACGCGCTTATCAACGGGCTCTGCAAGGCCAAGCGGTTGAAGGACGCGCGAAAGGTGCTCAAGGAGTTTGGAGAATCCGGTTACGAACCGAACGCGATTACTTACACCACCGTCATGAAATGCTGCTTCCGGGGCGGTTTTTTCGAGCAAGGGTTGGAGATGTTGTCGGATATGAGGAGTTTAGGGTTCACGTTCGACGGATTCGCGTATTGCACGGTGATTGCTGCGATGATCAAGACTGGCCGGATGCGCGAGGCGGAGGAGATAATCAAGATAATGGTGAGTTCCGGCGTTCGGCCGGATCTCGTGTCCTATAACACTTTAATTAACCTTTATTGCAGGCAGGGGAGGTTGGAGGATGCATTGAAATTGTTGGATGAGATTGAGGAGGAGGGGTTGGAGTGTGATCAGTATACACATACTATTATTGTTGATGGATTGTGTAAGGCTGGTGATTTTGTTGGGGCTCAGAAGCACTTGAATTACATGAATACATTAGGGTTTGGATATAATTTGGTTGCGTTTAATTGTATGCTTGATGCTTTGGGGAAGGCTGGGCATATTGATCATGCTGTGAAGTTGTTTGAGGTGATGGAGGTGAAGGATTCGTTTACATATACTATATTGGTGCACAACCTTTGCAGGGCGAGGAGGTTCCTTTGTGCCTCAAATGTGTTGGTTTCGTGTTTAAAATGTGGGTACCAGGTGTTGAGGGCCACTCAGAGGGCGGTTATTGATGGCCTCCGGAGTATTGGGTTTACAAATGAAGCGAGGAAGGTTAGGTTGAGGATCAGATTGGCACGGTTTGTGCCTTGA 1386 0.4957 MPFWSPQRSKLSTKILNITISSLCKAKQIAKAESVIIDGIRIGVLPDVVTYNTLINAYCRFVSIDVAYSVLERMREAGIPPDVVSYNSLISGAVRKCLLSKALDLFEEMLARGVTPDAWSHNILMQSLFKLGKPDEANRVFKETVLRGEVQATTYNVMINGLCKNGYVSNALSLFRNLQRHGFVPQVLTYNALINGLCKAKRLKDARKVLKEFGESGYEPNAITYTTVMKCCFRGGFFEQGLEMLSDMRSLGFTFDGFAYCTVIAAMIKTGRMREAEEIIKIMVSSGVRPDLVSYNTLINLYCRQGRLEDALKLLDEIEEEGLECDQYTHTIIVDGLCKAGDFVGAQKHLNYMNTLGFGYNLVAFNCMLDALGKAGHIDHAVKLFEVMEVKDSFTYTILVHNLCRARRFLCASNVLVSCLKCGYQVLRATQRAVIDGLRSIGFTNEARKVRLRIRLARFVP 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01305 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Spst9g01305 461 SUPERFAMILY HCP-like 99 219 - -
Spst9g01305 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Spst9g01305 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Spst9g01305 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Spst9g01305 461 Pfam PPR repeat 43 75 IPR002885 -
Spst9g01305 461 Pfam PPR repeat family 81 130 IPR002885 -
Spst9g01305 461 Pfam PPR repeat family 185 233 IPR002885 -
Spst9g01305 461 Pfam PPR repeat family 361 405 IPR002885 -
Spst9g01305 461 Pfam PPR repeat family 290 339 IPR002885 -
Spst9g01305 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 116 IPR002885 -
Spst9g01305 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Spst9g01305 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 47 81 IPR002885 -
Spst9g01305 461 NCBIfam pentatricopeptide repeat 363 391 IPR002885 -
Spst9g01305 461 NCBIfam pentatricopeptide repeat 120 147 IPR002885 -
Spst9g01305 461 NCBIfam pentatricopeptide repeat 293 326 IPR002885 -
Spst9g01305 461 NCBIfam pentatricopeptide repeat 154 186 IPR002885 -
Spst9g01305 461 NCBIfam pentatricopeptide repeat 189 222 IPR002885 -
Spst9g01305 461 NCBIfam pentatricopeptide repeat 84 118 IPR002885 -
Spst9g01305 461 NCBIfam pentatricopeptide repeat 223 255 IPR002885 -
Spst9g01305 461 NCBIfam pentatricopeptide repeat 259 291 IPR002885 -
Spst9g01305 461 NCBIfam pentatricopeptide repeat 49 83 IPR002885 -
Spst9g01305 461 Gene3D Tetratricopeptide repeat domain 284 356 IPR011990 GO:0005515
Spst9g01305 461 Gene3D Tetratricopeptide repeat domain 149 214 IPR011990 GO:0005515
Spst9g01305 461 Gene3D Tetratricopeptide repeat domain 215 283 IPR011990 GO:0005515
Spst9g01305 461 Gene3D Tetratricopeptide repeat domain 5 148 IPR011990 GO:0005515
Spst9g01305 461 Pfam PPR repeat 259 288 IPR002885 -
Spst9g01305 461 Pfam PPR repeat 154 183 IPR002885 -
Spst9g01305 461 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 11 253 - -
Spst9g01305 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01305 17 455 Glycosyltransferase AT1G05670 29.279 3.12e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01305 - - gmx:100808229 796.578