Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01236 ATGGAAAACGCCGATGTTTTCTTGGGCTTACAGGACTTCCTCGAGCGCATGCGGCAGCCCTCCGCCGCTGAATTCGTCAAAGCAATCAAAAGTTTTATCGTTTCGTTTTCGAACAATGCCCCTGATCCCGATAGGGACAGTGCCTTGGTTCAAGCGTTCCTTGCGAAAATGGAAGCGGATTTCAGGGCTCATTCTCTTTGGGCTGGTTGCTCTGAAGAGGAGCTTGAAAGTGCCGGTGAAGGACTTGAGAAGTATGTCATGACAAAATTATTCGCTCGTGTATTTGCTTCGGTTCCAGATGATGTAAAACTTGATGACCAGCTTTCTGAGAAGATGGCTTTGATTCAACAATTTGTTCGACCCGAAAATTTGGATATCAAGCCACCATTTCAGAATGAATCATCGTGGTTGCTCGCACAGAAAGAATTACAGAAGATCAACATGTACAAAGCTCCCAGGGACAAACTTGTGTGTATTCTGAATTGTTGCAGGGTTATTAGCAACTTGCTGCTTAATGCTTCTCTTGCTTCCAAAGAGAATCCTCCAGGAGCTGATGAATTTCTTCCTGTGCTTATTTATGTAACCATAAAGGCAAACCCTCCACAACTACACTCAAATCTACTGTACATACAAAGGTTTAGGCATCAATCTCGATTGGTTGCAGAAGCGGCATATTATTTTACCAACATGCTCTCTGCCGAGTCCTTCATCTCAAACATTGATGCCACAGCCATTTCAATGGATGAAGCTGAGTTTGAGAGTAGTATGGAATTTGCTCGTGCTATGCTTTCAGGCATTTCAGTTGATACGCTAGATCCTGGTTTACCTTATCAAAAAAATGGACCGCATCCAATAGCAGAACTCTCTACGCACAAATATGAAGCTTTGAGTGATAATAAGGACTCTGCACTACAAACTCCGTCATCTGTTGCAAAATCAGAAAGCAAGAAAGTTGCTTTTGCAGATGAATTACCGATTACAAAAGTTCCATCACTCTCGGATTTGGAGAATAAAGGGGCAAGTATGATTTTGAAGGAGAATAAGTTGAATGAAGTTTTCGGGGAGTTTCCATATTTGTTTGCTAGAATAGGGGATCTAACAGTAAGTGATGTTGAAGACCTGCTAAATAATTACAAACAACTTGTTTTCAAGTATGTCTCTCTTTCCAAAGGGTTAGGCGTCTCTCCTACATCTCAGCCACCAGCCAATCCCCAAAATAATTCTGAAGACCATGCTGAAACAACAATAGATTCTTCAGACAGTGAACCTGTAGATGAGAAAAATAAATTTGAAGAATCTATTGATACAGAGGATAGTTCAGATAAAGTTTCACATATCGAGGATACAAAAATTGAATCTGGTCTGCCACAGAATGAACCAGCTGCTCCTGATGGTGATGCCCCCATTTAA 1410 0.4142 MENADVFLGLQDFLERMRQPSAAEFVKAIKSFIVSFSNNAPDPDRDSALVQAFLAKMEADFRAHSLWAGCSEEELESAGEGLEKYVMTKLFARVFASVPDDVKLDDQLSEKMALIQQFVRPENLDIKPPFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCRVISNLLLNASLASKENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRHQSRLVAEAAYYFTNMLSAESFISNIDATAISMDEAEFESSMEFARAMLSGISVDTLDPGLPYQKNGPHPIAELSTHKYEALSDNKDSALQTPSSVAKSESKKVAFADELPITKVPSLSDLENKGASMILKENKLNEVFGEFPYLFARIGDLTVSDVEDLLNNYKQLVFKYVSLSKGLGVSPTSQPPANPQNNSEDHAETTIDSSDSEPVDEKNKFEESIDTEDSSDKVSHIEDTKIESGLPQNEPAAPDGDAPI 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01236 469 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Spst9g01236 469 MobiDBLite consensus disorder prediction 394 412 - -
Spst9g01236 469 Gene3D - 17 97 - -
Spst9g01236 469 FunFam Vacuolar protein sorting-associated protein 9A 99 265 - -
Spst9g01236 469 MobiDBLite consensus disorder prediction 394 469 - -
Spst9g01236 469 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Spst9g01236 469 MobiDBLite consensus disorder prediction 413 449 - -
Spst9g01236 469 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Spst9g01236 469 PANTHER RAB GDP/GTP EXCHANGE FACTOR 7 385 IPR045046 GO:0005085|GO:0016192
Spst9g01236 469 Gene3D VPS9 domain 99 265 IPR037191 -
Spst9g01236 469 SMART vps9_2 135 254 IPR003123 -
Spst9g01236 469 SUPERFAMILY VPS9 domain 11 256 IPR037191 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01236 Spst-Chr9 11695223 11701813 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01236 K20131 - gmx:100810958 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01236 9 11695223 11701813 Spst9g01236 9 11695223 11701813 ECH