Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01233 ATGGCTACGTTTCTCTTCAATCAATCTCTACTGGCTTCTTGTCCTTGTTCTACTCACTTCTCTTCAAAACCCTTTCAAACCCTGAAACCCCAAATCAAATCTTTTCCATCTCGCGGGCTTCCACGCCCCCTAATTTCCTCTCTCAATCAAAGAACCCCATTAAAGTATTCCCAAGACTTCCCTCCAACTAGAAATGATGAGACAGAGGAGACCCGGAATGATGTGAGAGGGATAGAAGGTGATGAAGATAAAAGACCGTTACCCAGTTTAATGGTCCTCCTTGAAGCATACAAAGAAGCCTTTTTTAATGGTGATGGAAATAGTGTAGCTCTGATTGAAGAGGGAATATGTTCAGCAGCAAATCGAAAAAATAAATTGATCCAGAAAGTATCAAGTTTATCAGCAGACAAAGCTGCTTCCAAGGATAGATATATTCGATTACAAGCTGATTTTGATAATTTTAGAAAAAGGGTTGACAAAGAAAGACTTAACATCCAATCTGACGCCCAACAACAACTCATTGAAAAGCTTTTGTTGATGGTGGACCATTTTGAGAAAACCAAACAACAAATTAAAGCAGCAACAGAGAAAGAGAAGAAAATTGATGTTAGCTATCAAGGTATTTACAAACAATTTGTAGAGGTTCTGAGGAGTCATCATGTTTCAGTGGTAGCAACAGTGGGCAAGCCGTTTAATCCCTTGCAACATGAAGCCATTGCACGTGAGGAGTCAACAGAGTTCAAGAAAGGGATTATAATTAAAGAATCCCGACGTGGTTTCTTGCTCAGAGATCGAGTTCTTAGGCCAGCCCTCGTCAAGGTTTCATTAGGCCCTGGAACTAAGAAATCTCCAGTGTTTCCTGACAATTCCCTGGAGCAACCTCCAACAGCTGCCGGAATAGACGAAAGATAG 912 0.409 MATFLFNQSLLASCPCSTHFSSKPFQTLKPQIKSFPSRGLPRPLISSLNQRTPLKYSQDFPPTRNDETEETRNDVRGIEGDEDKRPLPSLMVLLEAYKEAFFNGDGNSVALIEEGICSAANRKNKLIQKVSSLSADKAASKDRYIRLQADFDNFRKRVDKERLNIQSDAQQQLIEKLLLMVDHFEKTKQQIKAATEKEKKIDVSYQGIYKQFVEVLRSHHVSVVATVGKPFNPLQHEAIAREESTEFKKGIIIKESRRGFLLRDRVLRPALVKVSLGPGTKKSPVFPDNSLEQPPTAAGIDER 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01233 303 FunFam Protein GrpE 220 275 - -
Spst9g01233 303 CDD GrpE 141 274 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Spst9g01233 303 ProSitePatterns grpE protein signature. 231 274 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Spst9g01233 303 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 222 276 IPR009012 GO:0006457
Spst9g01233 303 Hamap Protein GrpE [grpE]. 65 276 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Spst9g01233 303 PRINTS GrpE protein signature 145 161 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Spst9g01233 303 PRINTS GrpE protein signature 173 188 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Spst9g01233 303 PRINTS GrpE protein signature 255 274 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Spst9g01233 303 PRINTS GrpE protein signature 228 243 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Spst9g01233 303 MobiDBLite consensus disorder prediction 278 303 - -
Spst9g01233 303 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 125 219 IPR013805 -
Spst9g01233 303 Gene3D - 112 217 IPR013805 -
Spst9g01233 303 Pfam GrpE 116 275 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Spst9g01233 303 Gene3D Head domain of nucleotide exchange factor GrpE 220 275 IPR009012 GO:0006457
Spst9g01233 303 PANTHER GRPE PROTEIN 87 275 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01233 Spst-Chr9 11629389 11632576 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01233 K03687 - gmx:100809893 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01233 9 11629389 11632576 Spst9g01233 9 11629389 11632576 ECH