Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01225 ATGGTGGTAGTTATCGTTGAGGGCCCCAGAACCTCTTCGTTCACGTCTTCCACAACCGACAAGAAAGTGTTTCGTACTTGCAAGTCGAATTGGCACCGAGTGAAGAGCTTCAAAGTTCAAAGGAAAACTATGAGCAATCTGAGAACCTTGTGTAGACCTCAGACGGTGTTCTCGTTCATTATTTGCAGACACCAATTTCGACCTAGGGTTTCGTTTTCAAACCCTAATTGCAAGCCCCGTTTGCTGTCGCCGTTTCTGTACTCTACAATCGGTTCTTGGGGTTCGAAATGGTTTCGCGTGAATCAGAGGAGAACCGTGGCTAAGGCATCGAATTGGGCTGAACAAAAATCCCCTTATGAAACTCTCGAATTGGAAGGAGATACTGATGAGGAGCAGATAAAAAATGCTTACAGACGCTTGGCAAAATTTTATCATCCAGATGTCTATGATGGCAGAGGAAACCTTGAAGAAGGTGAAACAGCAGAAGCTAGATTCATCAAGATTCAAGCAGCTTATGAATTGCTTATAGATGGGGATAGGCGAAGAGAGTATGATTTCGATAACCGGGTCAACCCTATGAAGGCATCTCAGGCATGGGTGGAATGGCTTATTAAAAAGCGAAAAGCTTTCGATCAGCGGGGTGATATGGCAATTGCTGCTTGGGCTGAACAGCAACAGCGCGAGTTAAATCTTCGTGTGCGTCAACTTTCTCGTTCAAAGATTGATCCAGATGAAGCAAGGAGGATTCTGGCGAGAGAAAAGAAGGCTTCGGCTGAATATTACTCGAATACCCTTAAAAGACACACACTTGTACTGAAGAAAAGAGATTTGATGCGAAGAAAGGCGGAGGAAGAAAAGAAGACTATCAGCCGGCTCTTGGCAGCAGAAGGTCTTGAACTTGATGATTCAGATGGTGATGAGTCACGCTAG 930 0.4484 MVVVIVEGPRTSSFTSSTTDKKVFRTCKSNWHRVKSFKVQRKTMSNLRTLCRPQTVFSFIICRHQFRPRVSFSNPNCKPRLLSPFLYSTIGSWGSKWFRVNQRRTVAKASNWAEQKSPYETLELEGDTDEEQIKNAYRRLAKFYHPDVYDGRGNLEEGETAEARFIKIQAAYELLIDGDRRREYDFDNRVNPMKASQAWVEWLIKKRKAFDQRGDMAIAAWAEQQQRELNLRVRQLSRSKIDPDEARRILAREKKASAEYYSNTLKRHTLVLKKRDLMRRKAEEEKKTISRLLAAEGLELDDSDGDESR 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01225 309 ProSiteProfiles dnaJ domain profile. 117 188 IPR001623 -
Spst9g01225 309 SMART dnaj_3 116 180 IPR001623 -
Spst9g01225 309 FunFam Chaperone protein dnaJ 103 208 - -
Spst9g01225 309 CDD DnaJ 118 177 IPR001623 -
Spst9g01225 309 ProSitePatterns Nt-dnaJ domain signature. 165 184 IPR018253 -
Spst9g01225 309 Gene3D DnaJ domain 102 201 IPR036869 -
Spst9g01225 309 PANTHER CO-CHAPERONE PROTEIN DJLA 78 286 - -
Spst9g01225 309 SUPERFAMILY Chaperone J-domain 112 186 IPR036869 -
Spst9g01225 309 Pfam DnaJ domain 118 185 IPR001623 -
Spst9g01225 309 PRINTS DnaJ domain signature 160 180 IPR001623 -
Spst9g01225 309 PRINTS DnaJ domain signature 206 225 IPR001623 -
Spst9g01225 309 PRINTS DnaJ domain signature 119 137 IPR001623 -
Spst9g01225 309 PRINTS DnaJ domain signature 137 152 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01225 Spst-Chr9 11595974 11598588 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01225 - - vra:106762321 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01225 9 11595974 11598588 Spst9g01225 9 11595974 11598588 ECH