Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01208 ATGGCTGCTCTCCGCGCCGTGCTTCGTCACATAAACACGTGCACCACCTACGCTCCACCGCGGCGCCAACCGCTGGCGTTGCTTTTGAGTTGTGGCGTCACGTGGCCGTGTCTTGTTTCCTCCAAACCCTCCAGAACCGTTAAATCCTGTGCAGGTTCAGACAGTTACAAGTTGGTGGTGAAGAAAGACGAGCGGTTGGGTGCGGGGGAGTGTGTCGACGAGGTTGTTGGGAGTGGGACCACAATTGCGGCCATCGTAACTTCCTTAGGGGGGCCACCTGCCGCCGTTGGAATTGTTCGGCTTTCGGGCCCTGAGGCAGTATCTATTGCTGGTCGAGTGTTTCGGCCCGCTAGGAACGCGTGGCGGCCCACCAGCCACGTCGTGGAATACGGCGTGGTCTTGGACTCCGACGGCAACGTGATCGACGAGGTCTTGGCGGTGCCGATGCTGGCCCCGAGGTCGTACACGCGCGAAGACGTGGTAGAGCTTCAGTGTCACGGGAGCGAAGTGTGTCTGCGCCGCGTGCTAAGGACTTGTTTGGAAGCTGGAGCAACTCTTGCTCAACCAGGCGAGTTTACTCTTCGCGCTTATCTTAACGGTCGTTTGGATCTCTCACAAGCCGAAAATGTTGCAAGATTAATTGCCGCCAAATCTGTGGCTGCTGCAGATGCTGCACTGCAAGGAATTCAGGGTGGTTTTTCTTCTCTTGTTCGATCTTTGAGGAGTCAGTGCATTGAGTTGCTTACTGAGATTGAAGCACGTTTAGACTTTGATGATGAGATGCCGCCTCTGGATTTGAATCTGATCATGGATAAAATCCATGACATGTCTCGAGACGTTGAGAATGCATTGGAGACAGCAAACTATGACAAGCTTCTTCAATCTGGAATACAGATAGCAATAGTTGGCCGCCCCAATGTTGGCAAGTCAAGCCTTCTGAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAATATTAGTGTCGGTGGCATTCCTATAACCCTTCTTGATACAGCAGGCATTAGGGACACTGACGATATTGTGGAAAAGATTGGTGTTGAGAGATCTGAAGCAGTTGCTAGAGGTGCTGATTTAATTATCATGACTGTGAGTGCTGTGGAAGGGTGGACATCTGAAGACACCAAACTTCTTGAAAGGATTCAATCTACCAAGGGATCAAATGGATCATCCACCCCAGTAATCCTTGTGGTCAACAAGATAGATTGTAAACCGGATGCTGAGACTGAATGGGACAAAGGATGTCAGAATCATAAAATTTTCAGCAGATATGTGTTTACATGTGCTGTTACAGGTCAAGGATTACAAGACTTAGAGAGGGCGGTATTAAAGATTGTGGGTCTTGAAGCCATTCCTGCCGGGGGTCGCAGATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTGCAAGGTTACAGTCATCAATAAAGGAGGAACTGCCTCTGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCCCTTCGACAGATAAGTGGAGAAAATATATCGGAGGAAGTTTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAATAG 1638 0.4884 MAALRAVLRHINTCTTYAPPRRQPLALLLSCGVTWPCLVSSKPSRTVKSCAGSDSYKLVVKKDERLGAGECVDEVVGSGTTIAAIVTSLGGPPAAVGIVRLSGPEAVSIAGRVFRPARNAWRPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAYLNGRLDLSQAENVARLIAAKSVAAADAALQGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPPLDLNLIMDKIHDMSRDVENALETANYDKLLQSGIQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEANISVGGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSTKGSNGSSTPVILVVNKIDCKPDAETEWDKGCQNHKIFSRYVFTCAVTGQGLQDLERAVLKIVGLEAIPAGGRRWTVNQRQCEQLVRTKEALARLQSSIKEELPLDFWTIDLRDAALSLRQISGENISEEVLSNIFGKFCIGK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01208 545 PRINTS Transforming protein P21 ras signature 443 465 - -
Spst9g01208 545 PRINTS Transforming protein P21 ras signature 297 318 - -
Spst9g01208 545 PRINTS Transforming protein P21 ras signature 409 422 - -
Spst9g01208 545 Hamap tRNA modification GTPase MnmE [mnmE]. 80 545 IPR004520 GO:0003924|GO:0005525|GO:0006400
Spst9g01208 545 CDD TrmE_N 81 200 IPR018948 -
Spst9g01208 545 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 296 466 IPR031168 -
Spst9g01208 545 Pfam 50S ribosome-binding GTPase 298 419 IPR006073 GO:0005525
Spst9g01208 545 Pfam MnmE helical domain 204 542 IPR025867 -
Spst9g01208 545 Gene3D tRNA modification GTPase MnmE domain 2 202 545 IPR027368 -
Spst9g01208 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 461 IPR027417 -
Spst9g01208 545 NCBIfam small GTP-binding protein domain 296 436 IPR005225 GO:0005525
Spst9g01208 545 CDD trmE 294 466 IPR031168 -
Spst9g01208 545 FunFam tRNA modification GTPase MnmE 297 473 - -
Spst9g01208 545 Pfam GTP-binding protein TrmE N-terminus 81 201 IPR018948 -
Spst9g01208 545 FunFam tRNA modification GTPase MnmE 76 201 - -
Spst9g01208 545 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 94 545 IPR004520 GO:0003924|GO:0005525|GO:0006400
Spst9g01208 545 Gene3D - 297 473 IPR027417 -
Spst9g01208 545 Gene3D Probable tRNA modification gtpase trme; domain 1 71 201 IPR027266 GO:0005515
Spst9g01208 545 PANTHER TRNA MODIFICATION GTPASE GTPBP3 65 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01208 Spst-Chr9 11342172 11346205 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01208 K03650 - gmx:100779193 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01208 9 11342172 11346205 Spst9g01208 9 11342172 11346205 ECH