Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01198 ATGACAAGCCACGTGGGGGAAGCAGCTATCGCCAGGCTTCCTGAACTTTTCTCTCAAGCAGCCACGTGGACTCCGCATATTGCTACTGGTGGAATGTATTTCCCCTCTCAATCCAACCGCTGGCTCAACGGGACCACCGTTCTATTTTTTCCAACTTATGTGAGAGTCGTGCCATCAGAGTTCTACTACACCAATGAAACCCTGGGCCGAAGCCAAACCCAACCCAAGGGGAAAGGCATGGGCTCTACCGTTGGTTTAGTTAGAAGTAAACGGCCGAGGCAGAAAATACACCACCACGCCTCTTCACTCTCCGCCCTTTCCCTCGTCTTAATCCTCTTATTCCTTCTCAGAATGGAGAACTTCAACAACGACGATCTCGAGTACGTCGGCGACTACTACGACGACGACGTACCTGACTTCCAAGATGATCACAATTCCGACGACATTGTTCCTCAGCAACCCTCCTGTGGCGATTCTCACGACTCCGACTTCGACTTCGACGATGATTTCCTAACGAGTAGTGCGAAGACTGATACCACTGCTTCCGAAGCTAGAAACGGGAAAGATATCCAGGGAATCCCCTGGGAGAGGCTTAATTACAGCAGGGATAAGTATCGCGAGACGAGACTGAAGCAATATAAAAATTACGAGAACCTCTCTCGTTCACGCCTCCACCTTCATAAGGAGTGCTTGAACGTGCAGAAGGGGAAGACCTTCTTTGACTTCTTCTTCAATACCAGGCTTGTCAAATCCACAATTGTGCATTTTCAGCTGAGAAATTTGTTGTGGGCAACTTCGAAGCATGATGTATACCTTATGCAAAACTACTCAGTAATGCACTGGTCCGCAGTACTACGAAGGGGTAAAGAAGTGCTTAACGTAGCCAAACCAATCGTTCCAAGCCTTAAGCGTCCTGGATTTTTAGCTCAGCCTGTCTCCAGAGTGCAAATAAGCACCATGGCTGTTAAGGAAAATCTGATGGTGGCAGGTGGTTTCCATGGTGAACTTATATGCAAGAATTTGAAACATCCTGGAGTTGTTTATTGTGGTAAAATAACTACAGATGATAATGCCATAACCAATGCTGTGGATGTTTACCGCAATCCAGCTGGGTCGTTGAGGGTCATCACAGCAAATAACGATTCCCAAGTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAACTATGATTGGTCTGTAAATAATACTTCTGTTAGTCCGGATGGAAAGTTGTTAGCTGTACTTGGGGACAGTACTGAGTGCTTGATAGCTGATGCTAACACTGGAAAGATTACTGGAAGCTTAAAAGGTCACTTGGACTACTCTTTTGCATCAGCTTGGCACCCGGATGGACGGATATTGGCCACTGGGAATCAGGACACAACTTGCCGGTTGTGGGACATTAGAAACCTTTCACAATCTATAGCTGTGTTGAATGGAAGAATGGGTGCTATTAGAGCATTGAGATTCACATCTGATGGACGGTTTTTGGCCATGGCTGAGCCCGCAGACTTCGTCCATATTTTTGACTCGCATTCTGGCTATATACAAGGTCAGGAGATAGATCTATTTGGCGAGATTGCTGGTATATCCTTTAGCCCAGACACAGAAGCTCTATTTGTGGGCATTGCTGACCGAACCTATGGTAGTTTGTTAGAGTTTGTCAGAAAACGTTATAATTATTACCTAGACTCCATGTTTTGA 1716 0.4586 MTSHVGEAAIARLPELFSQAATWTPHIATGGMYFPSQSNRWLNGTTVLFFPTYVRVVPSEFYYTNETLGRSQTQPKGKGMGSTVGLVRSKRPRQKIHHHASSLSALSLVLILLFLLRMENFNNDDLEYVGDYYDDDVPDFQDDHNSDDIVPQQPSCGDSHDSDFDFDDDFLTSSAKTDTTASEARNGKDIQGIPWERLNYSRDKYRETRLKQYKNYENLSRSRLHLHKECLNVQKGKTFFDFFFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSAVLRRGKEVLNVAKPIVPSLKRPGFLAQPVSRVQISTMAVKENLMVAGGFHGELICKNLKHPGVVYCGKITTDDNAITNAVDVYRNPAGSLRVITANNDSQVRVFDAENFASLGCFNYDWSVNNTSVSPDGKLLAVLGDSTECLIADANTGKITGSLKGHLDYSFASAWHPDGRILATGNQDTTCRLWDIRNLSQSIAVLNGRMGAIRALRFTSDGRFLAMAEPADFVHIFDSHSGYIQGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFVRKRYNYYLDSMF 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01198 571 ProSitePatterns Trp-Asp (WD) repeats signature. 458 472 IPR019775 -
Spst9g01198 571 ProSiteProfiles Trp-Asp (WD) repeats profile. 439 480 IPR001680 GO:0005515
Spst9g01198 571 SMART WD40_4 391 429 IPR001680 GO:0005515
Spst9g01198 571 SMART WD40_4 432 471 IPR001680 GO:0005515
Spst9g01198 571 SMART WD40_4 475 514 IPR001680 GO:0005515
Spst9g01198 571 SMART WD40_4 334 388 IPR001680 GO:0005515
Spst9g01198 571 Pfam WD domain, G-beta repeat 434 471 IPR001680 GO:0005515
Spst9g01198 571 Gene3D - 337 560 IPR015943 GO:0005515
Spst9g01198 571 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 123 568 - -
Spst9g01198 571 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 439 474 - -
Spst9g01198 571 FunFam WD-40 repeat family protein 352 568 - -
Spst9g01198 571 SUPERFAMILY WD40 repeat-like 313 551 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01198 Spst-Chr9 11120440 11126371 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01198 357 551 Miscellaneous Gene Families AT5G08390 25.000 9.40e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01198 - - gmx:100775453 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01198 9 11120440 11126371 Spst9g01198 9 11120440 11126371 ECH