Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01128 ATGTGCCCGGAGATGGCGAACCGCTCCCTCTCCGCCGGAATCAGACGTTTTGTGTTAGGCGCAAGAACTCTGTGCAGCACGGTTGCTTCTCGGGCTTCCTCGTTCTACGTGCCCTTCTTGAGCAAACTCAAATCCCCGAAGCAGAATCCATTGCTGGCGCTTCAAAATTGGGTGGACGAAGGCAACAATGTTTCACCCTACCAGCTCAGAAGCATCGGTAGAACCCTCATCAAATGGAAACGCTACCACCACGCCCTCGAGTTACTTAAATGGATTGAAAACCAGAAGAATTTCCATATGGTCCCAGCTGATCATGCTATGAAATTGGAGTTAATCATTGAAAATTATGGTCTAGTGGAAGCTGAAGAATATTTTATGAATCTACCTGACTCAACTGCAAAGAAGGCTGCCTGTCTTACTCTTCTACGTGCCTATGTAAGAGATCGGGGCACTTGTAAGGCAGAGGCGTTAATGGTGAAGCTCTATGAACTGGGCCTAGTGGTGAGCCCTCACCCTTTTAATGAGATGATGAAGTTGTATCTAGTGACATGTGAGTACAGGAAGGTACCCCTTGTTATCCAGCAAATGAAGCGGAATAGAATACCCTGCAATGTGCAGTCGTACAATCTTTGGATGAATGCTTATATTGAGGAAGAAGGATATGGGATTGCAGCGGTGGAGACAGTTTTTAGACAAATGCAAAATGACAAGAACGTTGAAGTGGGATGGAGCAGTCTTGCTACATTAGCCAATGTTTATATCAAAGCAGGACAATCTAAGAAAGCCACTCTGGTTCTCAAGGATGCCGAAAAGAAACTATCTACCTGCAACCGTCTTGGTTACTTCTTCCTCATAACACTATATGCTTCTTTGAAGGAAAAGGAAGGAGTGTTGCGGTTATGGGAAGCTAGTAAGGCAGTTGGTGGAAGAATCAGTTGTGCTAACTACATTTGTATACTAACATGCTTGGTGAAACTTCAGGACATTGTACAAGCCAAGAGAATCTTCTTAGAATGGGAATCTAATTGTCAGAAGTATGATATCAGAGTCTCTAATGTTCTTTTGGGTGCATATATGAGGAATGGATTAATGGAAGAAGCAGAATCATTACATCTCCACACATTGCAAAAGGGTGGTTGTCCAAACTATAAGACAATGGAAATTCTTGTAGAAGGATATGTGAATAAGAAAAAAACAGATGAGGCTATTATTGCAATGAAAAGAGCTTTGGCTATGATGAAAGACTGCCATTGGAGGCCGCCACATGGACTTGTGTTAGCCGTTGCGGAGATTTTGGAGAAAGATGGAAATCTTGAATATGCAAACAAGTATATTGCAGATATCCATAATTTTGGTCTTACTAGTTTACCATTGTATAAAATATTACTAAGAATGCATCTTTCTGCGAACAAACCGCCTTTCCATATCCTTAAAATGATGGTTGAAGATAAGGTTGAGATGGATGATGATACGCATTCCATCGTTAAAGCTTTCACGGGTTAA 1503 0.4198 MCPEMANRSLSAGIRRFVLGARTLCSTVASRASSFYVPFLSKLKSPKQNPLLALQNWVDEGNNVSPYQLRSIGRTLIKWKRYHHALELLKWIENQKNFHMVPADHAMKLELIIENYGLVEAEEYFMNLPDSTAKKAACLTLLRAYVRDRGTCKAEALMVKLYELGLVVSPHPFNEMMKLYLVTCEYRKVPLVIQQMKRNRIPCNVQSYNLWMNAYIEEEGYGIAAVETVFRQMQNDKNVEVGWSSLATLANVYIKAGQSKKATLVLKDAEKKLSTCNRLGYFFLITLYASLKEKEGVLRLWEASKAVGGRISCANYICILTCLVKLQDIVQAKRIFLEWESNCQKYDIRVSNVLLGAYMRNGLMEEAESLHLHTLQKGGCPNYKTMEILVEGYVNKKKTDEAIIAMKRALAMMKDCHWRPPHGLVLAVAEILEKDGNLEYANKYIADIHNFGLTSLPLYKILLRMHLSANKPPFHILKMMVEDKVEMDDDTHSIVKAFTG 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01128 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Spst9g01128 500 Gene3D Tetratricopeptide repeat domain 278 420 IPR011990 GO:0005515
Spst9g01128 500 Gene3D Tetratricopeptide repeat domain 74 277 IPR011990 GO:0005515
Spst9g01128 500 Pfam PPR repeat 352 371 IPR002885 -
Spst9g01128 500 PANTHER OS12G0527900 PROTEIN 42 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01128 Spst-Chr9 10340832 10343974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01128 40 420 EF-hand Containing Proteins AT1G02150 32.984 2.30e-72 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01128 - - gmx:100803685 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01128 9 10340832 10343974 Spst9g01128 9 10340832 10343974 ECH