Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01102 ATGCACGGTCGGCCTCGCAAAGCGTTGAAGCAAGAAGATGAAGCGGCTTTATCAGCCAAAGCTGAAAAGCTTCGTTCACTCCAAGCTCTCTTCCTCGCTAACCACCACAATAGCATATATAGCAAGGAAGCACTAGATGTAAGCGCGAAGCTTCTAGAGGTTAATCCAGAATGCTACACTGCTTGGAATTACAGAAAACTCGCCGTTCAACACCTCCTCTCTAACTCCGATTCCGATCCCCATGTGATCTTCCAAGACGAGCTCAAACTCGTAGAGATTGCTCTGAGGAAGAATTTCAAGTCTTACGGCGCGTGGCATCACAGAAAATGGGTGCTCAGCAAGGGACATTCGTCTATCGGCCACGAAATGCGCCTTCTGAATGGTTTTCAGAAGGCCGATCCTCGAAATTTTCACGCGTGGAATTACCGAAGGTTTGTTGCGGAACTGATGAAACGATCGGATGAGGATGAGTTGAAATACACGGAGGAAGTTATAGGGGCTAATTTCAGTAATTACTCTGCATGGCACAATCGTAGTGTGCTTTTATCAAATTTACTGAAAAAGAAGGCTGAAGGATATTTCCCTAAAGAAAATTTTTTGGAAGAGGAGTTTGAGCATGTCCACAATGCTATTTTTACAGATCCAGATGATCAGAGTGGTTGGTTTTATCATCTTTGGCTTATTGACCAGACAGTGAAAACTGATGCTCCTCTACTTGTTTCATCTTGGCCATCCCATGGATCTAGGATAACTTTAATTGGGGACAACAACCTTCGGGGTTGTGGTTTGTCTCTGCTGAATGGTACTCTTTTAGGCACAGGAACACTTCCAATCATTCTTGATTTCAATCAAGCTGTAGAAGGAATAAATTCATCCACAGTGGCTATTGAATCCGAGCTTTTAAAGGAGGAACTTATTTGGAAACCACTTTCAATGAACAATTCAAATACTGCTAAAGTTTGGGTTGTATATCTAAACCTTGGAAATATGGAACTTCTACCATCAAAAGCTTACTCTGTACAGATCAAGGTTGGACATTCTAAGGGTATTGCATTTTCTAATGGAAATCACTATAGTGATCCTTCCCAAATTTCCTTTAAAGTGCTAGTACAGACTGCATCTGCTGAACCTGCTGAAGGACAGGGTGGAAAAAGGACTACATGGAAGGATACCAATTTTCATAAAATTGATCATTTTCAGGAATCAGATGCCATTCTTTCTGCTGATAATAATCCCCATATTCCAACAACTTCCAATTGGTGCTCTGAGGAAATTGCTGAAGAAATAACTAAATTTCGAGACTTACTGTCAGAGTATGACTGTAAAATTGGAAAGCTTACACTTGCAAGACTTTTGACTGCTCTTGATTTGTTATCATCTCATCATGATGGAAGAAAATCTAACACTGAAGAAGTTCTTCAACTTTACACCGATCTGATGAAGTTGGATCCAACACATTCTCTATACTACAAAGACAAGCACAGTCTAATATCACTAAAGCGGATAACATCAACTAGGGACTCTTTACTACCATACTGCTACCACTATAAAGATGCAACAGAAACAATCACTGGTTATGTCTGTCTACGATTACAAAGTCTATCGTTGTCACGGATGGGATCCATTGAAAATTTATTGTGGGTGCAAATGCTAGACCTTAGTCACAACGAACTTCAATCCATTGAAGGATTGGAGGGCATGCAACTTCTATCTTGTTTAAATCTGAGTCATAATAAAATTCGTAGTTTTACTGCTTTGGTGCCTCTCAAATTGGTTAAGTCACTTAAGGTGTTGAATATCTCAAACAATGAGTTGGGCTCTCATTTGATTGACACAACGAGATACTTATGCCCTTCTCCTGTATCTCACACTGAGGAATTTGCCTGGGAGCGTTTTGAAATCCTCGCTGGCAGTGTTAGTGCCACAAATTTTTGGGAAGCTTTCTTGATATTTGGAAGCTTGGAATTGACCGAGTTAAACATAACAGGGAATGCAGTAGCAGATGAAAACTTCAGGTCATTTCTTGTCAAAGTTTTGCCAACACTCAAGTGGCTCGATGATGAAGAGCTATCTTGA 2076 0.4051 MHGRPRKALKQEDEAALSAKAEKLRSLQALFLANHHNSIYSKEALDVSAKLLEVNPECYTAWNYRKLAVQHLLSNSDSDPHVIFQDELKLVEIALRKNFKSYGAWHHRKWVLSKGHSSIGHEMRLLNGFQKADPRNFHAWNYRRFVAELMKRSDEDELKYTEEVIGANFSNYSAWHNRSVLLSNLLKKKAEGYFPKENFLEEEFEHVHNAIFTDPDDQSGWFYHLWLIDQTVKTDAPLLVSSWPSHGSRITLIGDNNLRGCGLSLLNGTLLGTGTLPIILDFNQAVEGINSSTVAIESELLKEELIWKPLSMNNSNTAKVWVVYLNLGNMELLPSKAYSVQIKVGHSKGIAFSNGNHYSDPSQISFKVLVQTASAEPAEGQGGKRTTWKDTNFHKIDHFQESDAILSADNNPHIPTTSNWCSEEIAEEITKFRDLLSEYDCKIGKLTLARLLTALDLLSSHHDGRKSNTEEVLQLYTDLMKLDPTHSLYYKDKHSLISLKRITSTRDSLLPYCYHYKDATETITGYVCLRLQSLSLSRMGSIENLLWVQMLDLSHNELQSIEGLEGMQLLSCLNLSHNKIRSFTALVPLKLVKSLKVLNISNNELGSHLIDTTRYLCPSPVSHTEEFAWERFEILAGSVSATNFWEAFLIFGSLELTELNITGNAVADENFRSFLVKVLPTLKWLDDEELS 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01102 691 ProSiteProfiles Leucine-rich repeat profile. 547 568 IPR001611 GO:0005515
Spst9g01102 691 Pfam Protein prenyltransferase alpha subunit repeat 155 185 IPR002088 GO:0008318|GO:0018342
Spst9g01102 691 Pfam Protein prenyltransferase alpha subunit repeat 122 148 IPR002088 GO:0008318|GO:0018342
Spst9g01102 691 Pfam Protein prenyltransferase alpha subunit repeat 84 113 IPR002088 GO:0008318|GO:0018342
Spst9g01102 691 Pfam Protein prenyltransferase alpha subunit repeat 42 72 IPR002088 GO:0008318|GO:0018342
Spst9g01102 691 Pfam Protein prenyltransferase alpha subunit repeat 200 230 IPR002088 GO:0008318|GO:0018342
Spst9g01102 691 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 2 499 - -
Spst9g01102 691 Gene3D Ribonuclease Inhibitor 638 691 IPR032675 -
Spst9g01102 691 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 199 233 IPR002088 GO:0008318|GO:0018342
Spst9g01102 691 Gene3D Protein prenylyltransferase 1 243 - -
Spst9g01102 691 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 83 117 IPR002088 GO:0008318|GO:0018342
Spst9g01102 691 FunFam Geranylgeranyl transferase type-2 subunit alpha 1 243 - -
Spst9g01102 691 ProSiteProfiles Leucine-rich repeat profile. 569 590 IPR001611 GO:0005515
Spst9g01102 691 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 40 74 IPR002088 GO:0008318|GO:0018342
Spst9g01102 691 SUPERFAMILY Protein prenylyltransferase 18 496 - -
Spst9g01102 691 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 118 152 IPR002088 GO:0008318|GO:0018342
Spst9g01102 691 Gene3D Ribonuclease Inhibitor 493 626 IPR032675 -
Spst9g01102 691 FunFam Rab geranylgeranyl transferase like protein 506 691 - -
Spst9g01102 691 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 153 187 IPR002088 GO:0008318|GO:0018342
Spst9g01102 691 SUPERFAMILY L domain-like 521 606 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01102 K14050 - gmx:100807900 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01102 9 10037751 10043952 Spst9g01102 9 10037751 10043952 ECH