Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01101 ATGCCCACTAACGAAGATTTTCAAGGCGTTTCAAATTGCTATGTGTTCAAGAGCCGATTGCAGGAGTATGCGCAGAAGGCAGGGCTGCCTACGCCTGTCTATGAAACTATCAAGGAGGGGCCTTCCCATGAACCTTCCTTCAGGTCAACAGTGATAGTTAATGATGTTCGGTATGATTCTTTGCCTGGATTTTCCAACCGGAAAGCAGCAGAGCAGTCAGCTGCCGAAGTTTCTTTGGTGGAGTTGGCCAAATCTAATATAGTTAATCAATCCATCACCCAACCTGTTCATGAAACAGGATTATGCAAAAATTTACTTCAGGAATATGCTCAGAAAATGAACTATGCAATGCCTATGTATCAGTGCAAAAAGGATGAAACACCAGGTCGAGCTTCTGTATTTTCATGTACGGTTGACATTGGGGGTATACTCTATATTGGGGGAGCAGCACGAACAAAGAAGGAAGCAGAGATTAAAGCTGCTAGAACTGCTCTATTAGCTATCCAATCAAGTGCATCTCATGCTTCCCAAAACCAGGTTGGCCATCCACAGTTGACGGTCCTTCCATGCAGAAAAAGGGTAGCAGAATCAGTTGCTATAGCTGATGAGAATTCAAATCCCCCAAAGCCTAAGAAAACGCGATTTAAAAGGAAATCTTCAAAGAGGAAAAATCCTAGAGATAAGATAGGCTCAATTCATACTGAAAACGTGGGTATTGGAACAAATATCAATCATGAAGTAGAAACACAAGCAATTGTTAATGGGGAATCTGGCCTCCATGAAACGAAATCTGAAAAATTCGCTTCAGAAGCCATGAAGAATTTAGAGAATGGAGTATCAGTTAATTATCCCGAGAAAGAAACATTGGCTGCGGAGGTTTCTTTTGCTCTGAAGAGCCAAGAAGGGGTTCTTGAAAATGGAAAGTCAACAGAATTTTATTCCAGGGAAAACAGTCTTGGGATTGTTGTGACAGAACTCTCTTCTGTGTCTAATGGAGACATTTTGGAAACGGGTGTGGAGATGAACAAACAGCAATACAACGGAGAAATGGTTTCTGACCATTGTGTCGTGGGGGGTTGA 1080 0.4213 MPTNEDFQGVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFSNRKAAEQSAAEVSLVELAKSNIVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVFSCTVDIGGILYIGGAARTKKEAEIKAARTALLAIQSSASHASQNQVGHPQLTVLPCRKRVAESVAIADENSNPPKPKKTRFKRKSSKRKNPRDKIGSIHTENVGIGTNINHEVETQAIVNGESGLHETKSEKFASEAMKNLENGVSVNYPEKETLAAEVSFALKSQEGVLENGKSTEFYSRENSLGIVVTELSSVSNGDILETGVEMNKQQYNGEMVSDHCVVGG 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01101 359 Gene3D - 98 170 - -
Spst9g01101 359 SUPERFAMILY dsRNA-binding domain-like 103 170 - -
Spst9g01101 359 FunFam Double-stranded RNA-binding protein 1 95 170 - -
Spst9g01101 359 SMART DRBM_3 102 169 IPR014720 -
Spst9g01101 359 SMART DRBM_3 16 83 IPR014720 -
Spst9g01101 359 FunFam double-stranded RNA-binding protein 1 13 89 - -
Spst9g01101 359 MobiDBLite consensus disorder prediction 199 232 - -
Spst9g01101 359 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 101 170 IPR014720 -
Spst9g01101 359 CDD DSRM_AtDRB-like_rpt1 15 83 IPR044450 GO:0003725
Spst9g01101 359 PANTHER RIBONUCLEASE III 13 228 IPR011907 GO:0003723|GO:0004525|GO:0006364
Spst9g01101 359 Gene3D - 16 97 - -
Spst9g01101 359 Pfam Double-stranded RNA binding motif 103 166 IPR014720 -
Spst9g01101 359 Pfam Double-stranded RNA binding motif 17 79 IPR014720 -
Spst9g01101 359 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 15 84 IPR014720 -
Spst9g01101 359 SUPERFAMILY dsRNA-binding domain-like 15 84 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01101 - - gmx:100782651 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01101 9 10032803 10035249 Spst9g01101 9 10032803 10035249 ECH