Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01092 ATGATCATCCCCGTTCGTTGCTTCACCTGTGGAAAGGTTATTGGTAACAAATGGGACACCTATTTGGACCTTCTGCAGGCAGATTACAGTGAAGGAGATGCATTGGATGCATTGGGACTAGTTCGGTATTGTTGTAGGCGCATGCTCATGACCCACGTTGATCTCATTGAGAAGTTACTCAATTACAACGCTCTGGACAAGGTCATATTTGTGTGCTGGTTCAGGTCCTTTGTCAAATTTCATTTTTGTCTCATCATAGCTTCTAGCAGTGTCACATTGATTGGCAACAACCATGATGTTGAAACTTACGGTGCAGAAGCAGAAGAAAGGAAGACCACAATGGAGGAGATGGTTATGGACAAAGAAGATAAAGAGCCACCCAACAATGTGAAAATGGGCCTGGCTCATAGTATAATGAAGAGGACAGGTCGCCGATCCAAGCAAACGAGTCCATTCCATGTCTCATCTTCGGAACATAACGAAAAGCAAATATACGAAGAGATGATTCACAAACTGGAGACAGAAAATAAAGCTTATCAGATTGAGATTGCTGAACTAAGGCAGCAACAACAGGGGAGTGATTTGTCAACTTCGAAGAATGAGGTTGAAAAGCTTAAGAAGGAGTATCTTCAGAAGCTGAACTTGCTTGAAGATCAGGTTACGGAATTGAAGATGAAATTGGGAACTCGATCCCAGTTTTCAACTCAAAAGAAAAAAGTCGATGAATCAACTAAGCAGTTACAATTTGAGATTCAAGGTTTGAAGGCTCAAAAGGTTCAACTGCAATGTAAAATAAAGTTAGAGTCTGTTCAATTTAGATTATGCAAGGCTCTATTTGAAAAAGAGATTCTTCAGCTTAAGAAAGAGGGAAGGAGGAATGGAATCAAGACCCAAAGCTTGCTGGATTCAAATGAAAGGCTTAAAATGGTATTACAACGGAAGACACAGGAAGCTTCTGCTGCCACTAAACTTCTAAAAGACTTCATAGCAACTCGAAAAGCTATTTCACACAGATCAACTGGTGCTAGAAGTAGAAATGGTGAACTAATTCAGGATGCCAAAGAAAAACTTGATGTCTCAACAAAGTTACACAAGTTATGTTCACAATATGAATCCAAAGTGGAAAAGATGGCTGGAGAGATTGCACAGCTGAAGGAAGAAATTGAGATGCTTAGGCAGGAAAAATTAGGGTCTCCATTACAGGAGGAAGAGTGTGACAGCCTGGAGAAAGTTCATGACATCCAAGATTTGAAAGAGCAAATGAGCAGCCTTGGTTGTCTACTTAAAGAATTACAATCGCGGAAGGAGAAGCTTGACGTCAAGGATAAGAAGCAGGGGGACCTGGTTCTATCTCTTCTCTATGAAGAGACTGATGACAAGATAAAAATGGATACACCTGAAATGAGCAGTACAAGTGAATATAGTGTTAAGACGGAAAGAACAGCTGAAGAGCTTTGTTGCTCATGCAGTAAGAAGTCATTGTGCAAGACTAACAAATGCAAATGCCGATCCAGCGGTGGGAACTGTGGAGCATCATGTGGCTGCACACGTTTCAAGTGCACAAATAGGGAATCAAACCAATTAGCAGGAAATGAACAACTAAAATCAGATAACACAGAATGTCCTGTGGACAATGATGGAAGTGTGACTGCTTCTGAATGTGCTAAACTACTTCAGAGTGCACTTGTTCAAAAACCTGCTAGTTGCAAGGACAACCCAGTGCCCATAAAGAAGCCATTACGTGACATTCAGAACTCAATGGTGAGATTGGATAATCAAAGGCAAGGAAAGAAAAAGAAAGCGCGAAAACCAGTAATTGAGCTGGTTACCAAGGATCCAATGTCTTCCACTCCAGAAAATAGCAGCGGTACTGAAACATACAAAATTGAAACGCGGGAAAATGACCCAACTAGGTTTGACAAGATGGCAAAACCAGATACAGAGAATAAATCTGGCCTGTCAAATGAATTGGCCACATCCATTAGTGAGGCACCTGCATTTCGTCGTTTAAGAAATCCACCCCGACAAGCCAAATCTGTTGTCGGGAAAGAAGACTGTTAG 2061 0.4124 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNALDKVIFVCWFRSFVKFHFCLIIASSSVTLIGNNHDVETYGAEAEERKTTMEEMVMDKEDKEPPNNVKMGLAHSIMKRTGRRSKQTSPFHVSSSEHNEKQIYEEMIHKLETENKAYQIEIAELRQQQQGSDLSTSKNEVEKLKKEYLQKLNLLEDQVTELKMKLGTRSQFSTQKKKVDESTKQLQFEIQGLKAQKVQLQCKIKLESVQFRLCKALFEKEILQLKKEGRRNGIKTQSLLDSNERLKMVLQRKTQEASAATKLLKDFIATRKAISHRSTGARSRNGELIQDAKEKLDVSTKLHKLCSQYESKVEKMAGEIAQLKEEIEMLRQEKLGSPLQEEECDSLEKVHDIQDLKEQMSSLGCLLKELQSRKEKLDVKDKKQGDLVLSLLYEETDDKIKMDTPEMSSTSEYSVKTERTAEELCCSCSKKSLCKTNKCKCRSSGGNCGASCGCTRFKCTNRESNQLAGNEQLKSDNTECPVDNDGSVTASECAKLLQSALVQKPASCKDNPVPIKKPLRDIQNSMVRLDNQRQGKKKKARKPVIELVTKDPMSSTPENSSGTETYKIETRENDPTRFDKMAKPDTENKSGLSNELATSISEAPAFRRLRNPPRQAKSVVGKEDC 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01092 686 FunFam DNA-directed RNA polymerases I, II, and III subunit 1 68 - -
Spst9g01092 686 ProSitePatterns RNA polymerases N / 8 Kd subunits signature. 2 11 IPR020789 GO:0003677|GO:0003899|GO:0006351|GO:0008270
Spst9g01092 686 Hamap DNA-directed RNA polymerase subunit Rpo10 [rpo10]. 2 56 IPR000268 GO:0003677|GO:0003899|GO:0006351
Spst9g01092 686 Gene3D - 1 67 - -
Spst9g01092 686 Coils Coil 580 600 - -
Spst9g01092 686 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER 1 67 IPR000268 GO:0003677|GO:0003899|GO:0006351
Spst9g01092 686 Pfam RNA polymerases N / 8 kDa subunit 2 59 IPR000268 GO:0003677|GO:0003899|GO:0006351
Spst9g01092 686 Coils Coil 162 189 - -
Spst9g01092 686 SMART CXC_2 482 526 IPR033467 -
Spst9g01092 686 SUPERFAMILY RNA polymerase subunit RPB10 1 63 IPR023580 -
Spst9g01092 686 Coils Coil 414 434 - -
Spst9g01092 686 Coils Coil 199 226 - -
Spst9g01092 686 MobiDBLite consensus disorder prediction 626 647 - -
Spst9g01092 686 MobiDBLite consensus disorder prediction 612 686 - -
Spst9g01092 686 Coils Coil 367 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01092 Spst-Chr9 9771971 9781836 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01092 - - gmx:100779955 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01092 9 9771971 9781836 Spst9g01092 9 9771971 9781836 ECH