Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01077 ATGGACTCCGTTCCCTTTCGCGATGGCAACATACACGCGATTCTCGACTCTCGATATCTCCATTCTCCACTGGACGTTAATCACACTTTGCAGACTCATTCCTCTCTGATTCGGAGGCTTTCTCAAGAAAGAGAGTTTGAGGGCCACCTTGGGTGTGTCAATGCGGTGGCTTGGAATTCCAAAGGTTCGATGTTGATATCTGGATCAGATGATACTCGGATCAATATTTGGAGCTATTCTGGCCGAAAACTTCTACATTCAATTGACACAGGACATACTGCAAATATATTCTGTACTAAGTTTATACCAGAAACTTCTGATGAGCTTGTAGCCTCTGGAGCTGGAGATGCTGAAGTCCGGTTATTTAATTTGTCTCGCTTAAGTGGGAGTGGATCTAGTGACAATTCCATCATTGTTCCATCTGCGCTTTACCAATGCCACGCTCGAAGAGTCAAGAAATTGGCTGTTGAAAATGGAAACCCCAATGTAGTATGGAGTGCTAGTGAAGATGGGACCCTAAGACAACATGATTTTCGGGAAGGTACTTCCTGTCCTCCAGCTGGGTCTTCACACCAAGAGTGTCGAAATATTCTTCTTGACTTACGAAGTGGATCTAAAAGATCACTTGCTGATCCTCCTAAACAAGTCCTTTCTTTAAAATCTTGTGATATTAGTTCAACTAGACCACATTTGCTCCTTGTTGGTGGGAGTGATGCCTTTGCACGCTTATATGATAGAAGGATGTTGCCACCTCTTAGCTCATGTCGGAAAAGAATGTCTCCTCCTCCTTGTGTTAATTATTTTTGTCCAATGCATCTTTCTGATCGTGTGAGTCCTTTGCTTTACTGA 849 0.4323 MDSVPFRDGNIHAILDSRYLHSPLDVNHTLQTHSSLIRRLSQEREFEGHLGCVNAVAWNSKGSMLISGSDDTRINIWSYSGRKLLHSIDTGHTANIFCTKFIPETSDELVASGAGDAEVRLFNLSRLSGSGSSDNSIIVPSALYQCHARRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRSGSKRSLADPPKQVLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCRKRMSPPPCVNYFCPMHLSDRVSPLLY 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01077 282 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Spst9g01077 282 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Spst9g01077 282 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 10 275 IPR045151 -
Spst9g01077 282 SMART WD40_4 81 123 IPR001680 GO:0005515
Spst9g01077 282 SMART WD40_4 39 78 IPR001680 GO:0005515
Spst9g01077 282 SMART WD40_4 137 177 IPR001680 GO:0005515
Spst9g01077 282 SMART WD40_4 212 245 IPR001680 GO:0005515
Spst9g01077 282 Gene3D - 34 128 IPR015943 GO:0005515
Spst9g01077 282 Gene3D - 129 267 IPR015943 GO:0005515
Spst9g01077 282 Pfam WD domain, G-beta repeat 43 78 IPR001680 GO:0005515
Spst9g01077 282 SUPERFAMILY WD40 repeat-like 39 256 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01077 37 138 Miscellaneous Gene Families AT5G08390 27.885 5.15e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01077 K11807 - pvu:PHAVU_009G0381000 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01077 9 9553931 9557427 Spst9g01077 9 9553931 9557427 ECH